Recent Releases of rnaseq
rnaseq - release v1.1
This release includes snakefmt formatting
- Python
Published by massiddamt over 2 years ago
rnaseq - RNA seq v1.0 release
A Snakemake-based pipeline for RNASeq data analysis.
Starting from fastq files, the pipeline merges files from different units and perform reads quality trimming.
The pseudoaligner kallisto is used to estimate transcripts abundance, with resulting .h5 files that can be imported into DESeq2for DE Analysis.
STAR 2-pass mapping is used for read alignment.
- Python
Published by massiddamt over 2 years ago