Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 5 DOI reference(s) in README -
✓Academic publication links
Links to: aps.org, zenodo.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (8.7%) to scientific vocabulary
Repository
Wannier Interpolation
Basic Info
- Host: GitHub
- Owner: irukoa
- License: gpl-3.0
- Language: Fortran
- Default Branch: main
- Size: 3.78 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 6
Metadata Files
README.md
WannInt
Wannier Interpolation
This is a tiny modern Fortran library to provide utilities for Wannier interpolation. The library is meant to serve as a building block for codes that compute the resolution of quantum mechanical operators in the Brillouin zone of a crystal.
Working principle
The Wannierization procedure consists of post-processing the results of a DFT calculation into Wannier states. These states are defined on real space and provide an obvious basis to express Bloch states in the reciprocal space. Many quantities in solid state physics (Berry curvature, optical responses, transport properties...) are expressed in reciprocal space in terms of the Hamiltonian and Berry connection operators and its derivatives. This library computes, given a matrix representation of the Hamiltonian and Berry connection in real space, $H{nm}(\textbf{R})$ and $A^j{nm}(\textbf{R})$ respectively, the matrix representation $H{nm}(\textbf{k})$ and $A^j{nm}(\textbf{k})$ and its derivatives in reciprocal space,
$$ H{nm}^{lp\cdots }(\textbf{k}) = \sum{\textbf{R}}\left[\left(iR^l\right)\left(iR^p\right)\cdots\right] e^{i\textbf{k}\cdot \textbf{R}}H_{nm}(\textbf{R}), $$
$$ A{nm}^{j \ lp\cdots }(\textbf{k}) = \sum{\textbf{R}}\left[\left(iR^l\right)\left(iR^p\right)\cdots\right] e^{i\textbf{k}\cdot \textbf{R}}A^j_{nm}(\textbf{R}). $$
The actual quantities $H{nm}(\textbf{R})$ and $A^j{nm}(\textbf{R})$ are given as inputs to the API's routines. For tight-binding models these can be given by hand. For real materials, these can be read from a file generated by the WANNIER90 code, by setting
write_tb = .true.
in the WANNIER90 file input card.
Dependencies
This library uses MAC's containers to store the result of the Hamiltonian and Berry connection calculations when derivatives are requested.
API
The derived type
fortran
type, public :: crystal
is defined.
type(crystal) :: Cr
Constructor
A crystal is initialized by calling (first way)
fortran
call Cr%construct(name, &
direct_lattice_basis, &
num_bands, &
R_points, &
tunnellings, &
dipoles, &
fermi_energy)
or (second way)
fortran
call Cr%construct(name, &
from_file, &
fermi_energy)
where
character(len=*), intent(in) :: nameis the name of the crystal.real(dp), intent(in) :: direct_lattice_basis(3, 3)is the basis of the Bravais lattice in $\text{A}$. The first index represents the vector label and the second is the vector component such thatdirect_lattice_basis(i, :)is the Bravais lattice vector $\textbf{a}_i$.integer, intent(in) :: num_bandsis the number of bands in the crystalline system.integer, intent(in) :: R_points(num_r_points, 3)represents the set of direct lattice points to be included in the sums $\sum{\textbf{R}}$ in terms of the Bravais lattice basis vectors. `Rpoints(i, :)` is identified with the integers $(c^i1, c^i2, c^i_3)$ such that
$$ \textbf{R} = c^i1\textbf{a}1 + c^i2\textbf{a}2 + c^i3\textbf{a}3 $$
complex(dp), intent(in) :: tunnellings(num_r_points, num_bands, num_bands)represents the Hamiltonian operator's matrix elements $H_{nm}(\textbf{R})$ in $\text{eV}$. The first index identifies $\textbf{R}$ and the second and third $n, m$, respectively.complex(dp), intent(in) :: dipoles(num_r_points, num_bands, num_bands, 3)represents the Berry connection's matrix elements $A^j_{nm}(\textbf{R})$ in $\text{A}$. The first index identifies $\textbf{R}$, the second and third $n, m$, respectively and the forth the cartesian component $j$.real(dp), optional, intent(in) :: fermi_energyrepresents the crystal's Fermi energy in $\text{eV}$.character(len=*), intent(in) :: from_fileis the path of a WANNIER90 format tight-binding file, relative to the program's execution directory. The Bravais lattice basis, the number of bands, the number of Bravais lattice points, their coordinates and the matrix elements of the Hamiltonian and Berry connection will be read from file.
Handles
These routines retrieve crystal's properties.
Name
Is called as,
fortran
name = Cr%name()
where character(len=120) :: name.
Direct lattice basis
Is called as,
fortran
direct_lattice_basis = Cr%direct_lattice_basis()
where real(dp) :: direct_lattice_basis(3, 3) is the direct lattice basis given in the constructor in $\text{A}$.
Reciprocal lattice basis
Is called as,
fortran
reciprocal_lattice_basis = Cr%reciprocal_lattice_basis()
where real(dp) :: reciprocal_lattice_basis(3, 3) is the reciprocal lattice basis in $\text{A}^{-1}$. It obeys dot_product(reciprocal_lattice_basis(i, :), direct_lattice_basis(j, :)) $=2\pi \delta_{ij}$.
Metric tensor
Is called as,
fortran
metric_tensor = Cr%metric_tensor()
where real(dp) :: metric_tensor(3, 3) is the metric tensor in in $\text{A}^2$. It obeys metric_tensor(3, 3) = dot_product(direct_lattice_basis(i, :), direct_lattice_basis(j, :)).
Cell volume
Is called as,
fortran
cell_volume = Cr%cell_volume()
where real(dp) :: cell_volume is the cell volume in $\text{A}$.
Number of bands
Is called as,
fortran
num_bands = Cr%num_bands()
where integer :: num_bands is the number of bands.
Number of $\textbf{R}$ points
Is called as,
fortran
nrpts = Cr%nrpts()
where integer :: nrpts is the number of $\textbf{R}$ points.
$\textbf{R}$ points
Is called as,
fortran
rpts = Cr%rpts()
where integer :: rpts(Cr%nrpts(), 3) is the set of $\textbf{R}$ points that are included in the sums $\sum_{\textbf{R}}$ in terms of the Bravais lattice basis vectors.
Site degeneracy
Is called as,
fortran
deg_rpts = Cr%deg_rpts()
where integer :: deg_rpts(Cr%nrpts()) is the set degeneracies for each of $\textbf{R}$ points that are included in the sums $\sum_{\textbf{R}}$. For crystals constructed from input, the array is a constant 1, but for real materials constructed from file, it stores the number of sites that are equivalent.
Hamiltonian matrix elements
Is called as,
fortran
hamiltonian_elements = Cr%get_real_space_hamiltonian_elements()
where complex(dp) :: hamiltonian_elements(Cr%nrpts(), Cr%num_bands(), Cr%num_bands()) is $H_{nm}(\textbf{R})$ in $\text{eV}$.
Berry connection matrix elements
Is called as,
fortran
berry_conn = Cr%get_real_space_position_elements()
where complex(dp) :: berry_conn(Cr%nrpts(), Cr%num_bands(), Cr%num_bands(), 3) is $A^j_{nm}(\textbf{R})$ in $\text{A}$.
Initialization query
Is called as,
fortran
initialized = Cr%initialized()
where logical :: initialized is .true. if the crystal has been initialized and .false. otherwise.
Fermi energy
Is called as,
fortran
fermi_energy = Cr%fermi_energy()
where real(dp) :: fermi_energy is the Fermi energy in $\text{eV}$.
Hamiltonian
Implements
$$ H{nm}^{lp\cdots }(\textbf{k}) = \sum{\textbf{R}}\left[\left(iR^l\right)\left(iR^p\right)\cdots\right] e^{i\textbf{k}\cdot \textbf{R}}H_{nm}(\textbf{R}), $$
in $\text{eV} \cdot (\text{A}^{d})$, where $d$ is the derivative order and is called as
fortran
H = Cr%hamiltonian(kpt [, derivative, all])
where
real(dp), intent(in) :: kpt(3)is a point in the Brillouin zone in crystal coordinates (relative to reciprocal basis vectors), i.e., $\textbf{k}_i \in [-0.5, 0.5]$ where the Hamiltonian or its derivatives are to be computed.integer, optional, intent(in) :: derivative: non-negative integer. If present, is the order of the derivative of the Hamiltonian, 0 means no derivative.logical, optional, intent(in) :: allif present and true, all the derivatives of the Hamiltonian from 0 up to derivative are computed.His the output value.- If
derivativeandallare not present,Hiscomplex(dp) :: H(Cr%num_bands(), Cr%num_bands())and represents the Hamiltonian $H_{nm}(\textbf{k})$. - If
derivative = nis present andallis not present,His MAC'scomplex_dptype(container) :: Hand stores the Hamiltonians $n$ th derivative $H{nm}^{lp\cdots }(\textbf{k})$. The container represents an array with shape `(Cr%numbands(), Cr%num_bands(), 3, ..., 3)` where the number of indices is $n + 2$. - If
derivative = nis present andallis present andtrue,His MAC'scomplex_dptype(container), allocatable :: H(:)and stores, in each index, the Hamiltonians $n$ th derivative $H{nm}^{lp\cdots }(\textbf{k})$. Each containerH(i)represents an array with shape `(Cr%numbands(), Cr%num_bands(), 3, ..., 3)where the number of indices is $n + 2$. The Hamiltonian (no derivative) is stored inH(1)`. - If
derivative = nis present andallis present andfalse,His MAC'scomplex_dptype(container), allocatable :: H(:)and stores, in the first index if the container, the Hamiltonians $n$ th derivative.
- If
Berry connection
Implements
$$ A{nm}^{j \ lp\cdots }(\textbf{k}) = \sum{\textbf{R}}\left[\left(iR^l\right)\left(iR^p\right)\cdots\right] e^{i\textbf{k}\cdot \textbf{R}}A^j_{nm}(\textbf{R}). $$
in $\text{A} \cdot (\text{A}^{d})$, where $d$ is the derivative order and is called as
fortran
A = Cr%berry_connection(kpt [, derivative, all])
where
real(dp), intent(in) :: kpt(3)is a point in the Brillouin zone in crystal coordinates (relative to reciprocal basis vectors), i.e., $\textbf{k}_i \in [-0.5, 0.5]$ where the Berry connection or its derivatives are to be computed.integer, optional, intent(in) :: derivative: non-negative integer. If present, is the order of the derivative of the Berry connection, 0 means no derivative.logical, optional, intent(in) :: allif present and true, all the derivatives of the Berry connection from 0 up to derivative are computed.Ais the output value.- If
derivativeandallare not present,Aiscomplex(dp) :: H(Cr%num_bands(), Cr%num_bands(), 3)and represents the Berry connection $A_{nm}^{j}(\textbf{k})$. - If
derivative = nis present andallis not present,Ais MAC'scomplex_dptype(container) :: Aand stores the Berry connection $n$ th derivative $A{nm}^{j \ lp\cdots }(\textbf{k})$. The container represents an array with shape `(Cr%numbands(), Cr%num_bands(), 3, 3, ..., 3)` where the number of indices is $n + 3$. - If
derivative = nis present andallis present andtrue,Ais MAC'scomplex_dptype(container), allocatable :: A(:)and stores, in each index, the Berry connection's $n$ th derivative $A{nm}^{j \ lp\cdots }(\textbf{k})$. Each containerA(i)represents an array with shape `(Cr%numbands(), Cr%num_bands(), 3, 3, ..., 3)where the number of indices is $n + 3$. The Berry connection (no derivative) is stored inA(1)`. - If
derivative = nis present andallis present andfalse,Ais MAC'scomplex_dptype(container), allocatable :: A(:)and stores, in the first index if the container, the Berry connection's $n$ th derivative.
- If
Dirac delta utility
The library includes an approximation of a Dirac delta as a narrow Gaussian,
$$ \delta(x) \approx \frac{1}{\sigma\sqrt{2\pi}}e^{-x^2/(2\sigma^2)}. $$
It can be called by
fortran
delta = dirac_delta(x, smr)
where
- real(dp), intent(in) :: x, smr are the evaluation point $x$ and smearing $\sigma$, respectively.
- real(dp) :: delta is an approximation to $\delta(x)$.
Subspace degeneracy calculator
The library includes a utility to calculate the degeneracy of subspaces. It can be called by
fortran
dl = deg_list(eig, degen_thr)
where
- real(dp), intent(in) :: eig(n) is a list of $n$ eigenvalues $\varepsiloni$ of an Hermitian operator sorted in ascending order.
- `real(dp), intent(in) :: degenthris a degeneracy threshold $\lambda$ such that two eigenvalues $i, j$ obeying $|\varepsilon_i- \varepsilon_j| < \lambda$ will be considered degenerate.
-integer :: dl(n)is a list of $n$ numbers expressing the dimensionality of each subspace. Ifdl(i) = M, then $\varepsilon_i = \varepsilon_{i+1} = \cdots = \varepsilon_{i + M - 1}$ up to $\lambda$. If $i < j < i + M - 1$, thendl(j) = 0. If the value is nondegenerate, thendl(j) = 1`.
Diagonalization utility
The library includes a wrapper of dsyev and zheev routines from LAPACK. It can be called by
fortran
call diagonalize(matrix, P [, D, eig])
where
real/complex(dp), intent(in) :: matrix(n, n)is a square symmetric/Hermitian matrix.real/complex(dp), intent(out) :: P(n, n)is an orthogonal/unitary matrix such that $D = P^{-1}MP$ is diagonal, $M$ beingmatrix.real/complex(dp), optional, intent(out) :: D(n, n)is the diagonal form $D$ ofmatrix.real(dp), optional, intent(out) :: eig(n)are the eigenvalues ofmatrix.
Matrix inverse utility
The library includes a utility to invert matrices by employing singular value decomposition. It can be called by
fortran
inv = inverse(matrix)
where
- real/complex(dp), intent(in) :: matrix(n, n) is an invertible square matrix $A$.
- real/complex(dp) :: inv(n, n) is an invertible square matrix $B$ obeying $AB=I$.
Schur decomposition utility
The library includes a wrapper of zgees routine from LAPACK. It can be called by
fortran
call schur(matrix, Z [, S, T])
where
complex(dp), intent(in) :: matrix(n, n)is a square matrix.complex(dp), intent(out) :: Z(n, n)is a unitary matrix such that $S = Z^{-1}MZ$ is upper-triangular, $M$ beingmatrix.complex(dp), optional, intent(out) :: S(n, n)is the upper-triangular form $S$ ofmatrix.complex(dp), optional, intent(out) :: T(n)are the diagonal entries ofS.
Singular value decomposition utility
The library includes a wrapper of zgesvd routine from LAPACK. It can be called by
fortran
call SVD(matrix, U, V [, sigma, eig])
where
complex(dp), intent(in) :: matrix(m, n)is a matrix.complex(dp), intent(out) :: U(m, m), V(n, n)are unitary matrices such that $\Sigma = U^{-1}MV$ is diagonal, $M$ beingmatrix.complex(dp), optional, intent(out) :: sigma(m, n)is the diagonal form $\Sigma$ ofmatrix.real(dp), optional, intent(out) :: eig(n)are the diagonal entries ofsigma.
Matrix exponential and logarithm utilities
The library includes tools to compute the exponential of a skew-Hermitian matrix and the logarithm of a unitary matrix, expsh and logu, respectively. These can be called by
fortran
E = expsh(SH)
L = logu(U)
where
complex(dp), intent(in) :: SH(n, n)is a skew-Hermitian ($SH^{\dagger} = -SH$) matrix.complex(dp) :: E(n, n)is a unitary matrix such that $E = e^{SH}$.complex(dp), intent(in) :: U(n, n)is a unitary matrix.complex(dp) :: L(n, n)is a skew-Hermitian matrix such that $L = \text{log}(U)$.
Build
An automated build is available for Fortran Package Manager users. This is the recommended way to build and use WannInt in your projects. You can add WannInt to your project dependencies by including
[dependencies]
WannInt = { git="https://github.com/irukoa/WannInt.git" }
in the fpm.toml file.
MAC's objects
fortran
type, public :: container_specifier
type, extends(container_specifier), public :: container
are made public by WannInt.
Owner
- Name: Álvaro R. Puente-Uriona
- Login: irukoa
- Kind: user
- Location: Donostia
- Company: CFM/MPC-UPV/EHU
- Website: https://cfm.ehu.es/team/56452/
- Repositories: 2
- Profile: https://github.com/irukoa
PhD Student in Solid State Physics, check my CV at https://irukoa.github.io/
Citation (CITATION.cff)
cff-version: 1.2.0
title: WannInt
message: Wannier Interpolation
type: software
authors:
- given-names: Álvaro
family-names: R. Puente-Uriona
email: alvaro.ruiz@ehu.eus
affiliation: UPV/EHU
orcid: 'https://orcid.org/0000-0003-1915-8804'
identifiers:
- type: doi
value: 10.5281/zenodo.10644791
description: Zenodo
repository-code: 'https://github.com/irukoa/WannInt'
url: 'https://github.com/irukoa/WannInt'
abstract: >-
Wannier Interpolation. A Fortran library with utilities
to compute the resolution of quantum mechanical
operators in the Brillouin zone of a crystal.
keywords:
- Fortran
- Wannier Interpolation
- Generic programming
license: GPL-3.0
GitHub Events
Total
- Release event: 1
- Push event: 1
- Create event: 1
Last Year
- Release event: 1
- Push event: 1
- Create event: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 0
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 1 minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- irukoa (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v2 composite
- fortran-lang/setup-fpm v5 composite