SuchTree - SuchTree 1.2

New features :

• Support for quartet tests
• Direct NEWICK string input

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches over 1 year ago

SuchTree - SuchTree 1.1

This release adds wheels for Linux on ARM and Windows on x86_64, and adds some new features :

• Basic support for support values provided by SuchTree.get_support( node_id )
• Relative evolutionary divergence (RED)
• Bipartitions
• Node generators for in-order and preorder traversal
• Summary of leaf relationships via SuchTree.relationships()

New Contributors

• @mmore500 made their first contribution in https://github.com/ryneches/SuchTree/pull/23

Full Changelog: https://github.com/ryneches/SuchTree/compare/v1.0...v1.1

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches about 2 years ago

SuchTree - SuchTree 1.0

SuchTree 1.0 : * Build system overhaul * TravisCI -> GitHub Actions * Standardized module structure * Automatic wheel builds using cibuildwheel * CPython : 3.6, 3.7, 3.8, 3.9, 3.10 * OS : Linux x8664, MacOS x8664, MacOS amd64

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches about 4 years ago

SuchTree - Build system overhaul

Not much about SuchTree itself has changed, but the build system has been completely overhauled. * Migrated build and unit tests from TravisCI to GitHub Actions * Wheels for Linux on amd64 and MacOS on Intel silicon are now automatically built using cibuildwheel * Dependencies should now be identified and installed correctly * Various minor cosmetic fixes

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches about 4 years ago

SuchTree - JOSS release

• revised examples notebooks
• new example data for big trees
• added installation instructions
• fixed sundry typos in the documentation

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches about 8 years ago

SuchTree - Release for JOSS review

Python3 support. New testing framework. Improved release engineering. Archived with Zenodo.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches about 8 years ago

SuchTree - now, with igraph!

Added support for igraph output from SuchLinkedTrees!

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches over 8 years ago

SuchTree - Actual 0.2 release

Some new features and bug fixes to make SuchTree maybe actually useful.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by ryneches over 8 years ago