in-situ-dissolution-compilation
Science Score: 44.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Academic publication links
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bcala1
- License: gpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 17.4 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Description of repository
compilation
Compilation of the dataset and estimation of , as described in the Methods (Section 2.1 and 2.2). Contains a sparate README for the workflow.
validation
Validation of our method to estimate , described and shown in SI.
glodap: Validation of method using recent GLODAPv2.2022 data
cdisk4: Comparison to measured values from the CDisK-IV cruise
analysis
Analysis of the compiled dataset (Section 3).
dissolution-above-saturation-horizon: Investigating dissolution above the saturation horizon (Section 3.3.1)
omega-crit: Investigating the existence of two dissolution regimes (Section 3.3.2)
xgboost
Machine learning part (Feature Importance) as described in the Methods (Section 2.3) and discussed in Section 3.2.
Note that there is a separate environment.yml file for all jupyter notebooks in this folder.
woa18
For part of the code, data from World Ocean Atlas 2018 is required. To run the code, download the files that are listed in 'required-woa18-files.txt' and save them locally. Copy the path to the folder with those files into the textfile 'path-to-woa18-files.txt'.
Code location for figures
Figure 3: analysis/map-experiments.ipynb
Figures 4, 5, 6, S12: analysis/overview-compilation.ipynb
Figures 7, 9, S14, S15: xgboost/interpret-model-pfi-pdp.ipynb
Figure 8: xgboost/plot-model-prediction.ipynb
Figures 10, 11, S16: analysis/dissolution-above-saturation-horizon/m77-dissolution.ipynb
Figures 12, 13, S17: analysis/omega-crit/Omega-crit-linear-regression-erf.ipynb
Figure 14: analysis/omega-crit/different-omega-crit.ipynb
Figures S1, S2, S3, S4, S5, S6: validation/glodap/glodap22-recent-woa-canyonb-comparison.ipynb
Figure S7, S8: validation/nutrient-comparison-WOA-CANYONB.ipynb
Figures S9, S10: validation/cdisk4/cdisk4-ctd-woa-canyonb-data-comparison.ipynb
Figure S11: validation/cdisk4/cdisk4-ctd-woa-canyonb-data-comparison.ipynb
Figure S12: analysis/experiment-conditions-representative.ipynb
Figures S13: validation/uncertainty-calculations.ipynb
Owner
- Name: Ben Cala
- Login: bcala1
- Kind: user
- Twitter: ben_a_cala
- Repositories: 1
- Profile: https://github.com/bcala1
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: in-situ-dissolution-compilation
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Ben
family-names: Cala
repository-code: 'https://github.com/bcala1/in-situ-dissolution-compilation'