musaendophytes

Script and data for Hill et al. (2021) doi: 10.3389/fmicb.2021.643731 🍌

https://github.com/rowena-h/musaendophytes

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README
  • Academic publication links
    Links to: frontiersin.org
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (2.6%) to scientific vocabulary

Keywords

biodiversity ecology fungi
Last synced: 6 months ago · JSON representation ·

Repository

Script and data for Hill et al. (2021) doi: 10.3389/fmicb.2021.643731 🍌

Basic Info
  • Host: GitHub
  • Owner: Rowena-h
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 5.2 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
biodiversity ecology fungi
Created over 5 years ago · Last pushed almost 3 years ago
Metadata Files
Readme Citation

README.md

Seed banks as incidental fungi banks: fungal endophyte diversity in stored seeds of banana wild relatives

Graphical abstract

Script and data for Hill et al. (2021) Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives. Front. Microbiol. 12:643731. doi: 10.3389/fmicb.2021.643731

Main OTU classification and ecology analysis script: Musaendoanalyses.r

Alignment file (with ambiguous regions excluded) of the markers RPB1, RPB2 and EF1α (including introns) for 130 taxa of Fusarium and related genera: Fusarium130T3lociintronsexcluded.phy

RAxML tree file: RAxMLbipartitions.Musafusarium130T3loci_introns

Owner

  • Name: Rowena Hill
  • Login: Rowena-h
  • Kind: user
  • Location: Norwich
  • Company: Earlham Institute

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this, please cite it as below."
authors:
- family-names: "Hill"
  given-names: "Rowena"
  orcid: "https://orcid.org/0000-0002-1046-5528"
- family-names: "Llewellyn"
  given-names: "Theo"
- family-names: "Downes"
  given-names: "Elizabeth"
  family-names: "Oddy"
  given-names: "Joseph"
- family-names: "MacIntosh"
  given-names: "Catriona"
- family-names: "Kallow"
  given-names: "Simon"
- family-names: "Panis"
  given-names: "Bart"
- family-names: "Dickie"
  given-names: "John B."
- family-names: "Gaya"
  given-names: "Ester"
title: "Musa Endophytes"
url: "https://github.com/Rowena-h/MusaEndophytes"
preferred-citation:
  type: article
  authors:
  - family-names: "Hill"
    given-names: "Rowena"
    orcid: "https://orcid.org/0000-0002-1046-5528"
  - family-names: "Llewellyn"
    given-names: "Theo"
  - family-names: "Downes"
    given-names: "Elizabeth"
  - family-names: "Oddy"
    given-names: "Joseph"
  - family-names: "MacIntosh"
    given-names: "Catriona"
  - family-names: "Kallow"
    given-names: "Simon"
  - family-names: "Panis"
    given-names: "Bart"
  - family-names: "Dickie"
    given-names: "John B."
  - family-names: "Gaya"
    given-names: "Ester"
  doi: "10.3389/fmicb.2021.643731"
  journal: "Frontiers in Microbiology"
  month: 3
  start: 643731 # First page number
  title: "Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives"
  volume: 12
  year: 2021

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