advance_scar
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.8%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: lidefi87
- License: apache-2.0
- Language: R
- Default Branch: main
- Size: 535 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
ADVANCE SCAR assignment
This repository was developed as part of the interview process for the Scientific Collaborator position at the Royal Belgian Institute of Natural Sciences.
The assignment involves the following tasks:
1. Develop a workflow performing quality control checks on the Antartic Phipoda collection available in GBIF
2. Prepare a report summarising data processing workflow and any important insights obtained during quality control
3. Create at least two plots using the QC data, one of which must be a map
Points 1 and 2 are addressed by the 01_data_qc_workflow.Rmd notebook, while the plots are included in 02_data_plots.Rmd. For convenience, .Rmd files are provided so they can be easily run locally for testing, while the .md files are a markdown friendly version that has been included to avoid having to run the notebooks before seeing the final product.
Requirements
This repository needs the following packages installed locally for it to run successfully:
- usethis
- tidyverse
- janitor
- rgbif
- CoordinateCleaner
- rnaturalearth
- ggspatial
- ggOceanMaps
- treemap
You can use the Installing_R_libraries.R included under the Scripts folder to check if any of these dependencies are not installed locally. If any libraries are missing, the code will automatically install them. To run the script copy the following lines into your RStudio console:
{r}
source("Scripts/installing_R_libraries.R")
checking_libraries()
The details for the R session used to develop scripts in this repository are included below:
```
R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale: [1] LCCOLLATE=EnglishAustralia.utf8 LCCTYPE=EnglishAustralia.utf8 LCMONETARY=EnglishAustralia.utf8 [4] LCNUMERIC=C LCTIME=English_Australia.utf8
time zone: Australia/Hobart tzcode source: internal ```
Additional information included in this repository
Although it was not part of the assignment brief, a couple of additional files have been added to this repository as it was encouraged for technical skills to be shown here.
An Apache License version 2.0 has been added as I assume this information is needed to track the usage of workflows/tools developed during this project. A citation file has also been added, which will make it easy for users to cite this repository.
These files are meant for demonstration purposes only.
Owner
- Name: Lidefi87
- Login: lidefi87
- Kind: user
- Location: Hobart, Australia
- Company: IMAS-UTAS
- Twitter: lidefi87
- Repositories: 2
- Profile: https://github.com/lidefi87
PhD candidate at The University of Tasmania's Institute of Marine and Antarctic Studies (IMAS)
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Fierro-Arcos" given-names: "Denisse" orcid: "https://orcid.org/" title: "QC workflow for Antarctic Phipoda dataset" version: 0.0.1 doi: TBA date-released: 2023-09-25 url: "https://github.com/lidefi87/ADVANCE_SCAR"
GitHub Events
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