msb1015_assignment1
Repository for keeping track of the progress of Msc Systems Biology - MSB1015 assignment 1
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.6%) to scientific vocabulary
Repository
Repository for keeping track of the progress of Msc Systems Biology - MSB1015 assignment 1
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
MSB1015_Assignment1
Welcome to the repository for MSB1015 assignment 1. In this assignment I have answered the following question: "What are drugs targetting genes linked to rheumatoid arthritis (RA)?"
I have answered this question using WikiData. I have implemented a SPARQL query into HTML to retreive the information from WikiData. Next, I have used d3 to visualize our obtained data.
Pseudocode
- Retreive data from WikiData using a SPARQL query implemented in HTML.
- Convert the retreived data object into approriate JSON format.
- Create Scalable Vector Graphics (SVG) using d3.
- Implement the SVG into HTML.
Files
wikidata.template.html --> This file is an example query provided by egonw.
DrugsRheumatoidArthritis --> This file contains the query to find drugs targetting genes linked to RA and visualization of this data using a html table and a tree. The file can be run by downloading it to your computer and opening it in a browser, such as Chrome or Firefox.
Authors
Suzanne ten Hage
Special thanks to Ammar Ammar and Egon Willighagen for their time and effort in helping to realize the tree visualization.
Additional information
Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.
Owner
- Login: setenhage
- Kind: user
- Location: Utrecht
- Website: https://www.linkedin.com/in/suzannetenhage/
- Repositories: 1
- Profile: https://github.com/setenhage
Citation (CITATION.cff)
cff-version: 1
message: If you use this software, please cite it as below.
authors:
- family-names: ten Hage
given-names: Suzanne Eva
title: MSB1015_Assignment_1
version: 1
date-released: 2019-09-22
GitHub Events
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Last synced: 10 months ago
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- Total issues: 3
- Total pull requests: 0
- Average time to close issues: 8 days
- Average time to close pull requests: N/A
- Total issue authors: 2
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- setenhage (2)
- egonw (1)