Releases | Open Source Science

Added

print_timings method #581
Test outcome positive rate #580
Positive rate #580
run_report_benchmark function #581 ### Changed
README.md modified
Test system modified
Document modified
PRE_calc function renamed to proportion_calc
Python 3.6 support dropped

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi 4 months ago

Added

dissimilarity_matrix method #579 ### Changed
HTML generator engine modified
README.md modified
Document modified
String templates modified ### Removed
html_init function
html_end function

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi 9 months ago

Added

5 new distance/similarity #349 #350
1. KuhnsIII
2. KuhnsIV
3. KuhnsV
4. KuhnsVI
5. KuhnsVII ### Changed
Test system modified
PyPI badge in README.md
GitHub actions are limited to the dev and master branches
AUTHORS.md updated
README.md modified
Document modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi 12 months ago

PyCM - Version 4.1

5 new distance/similarity added #349 #350
1. KoppenI
2. KoppenII
3. KuderRichardson
4. KuhnsI
5. KuhnsII
feature_request.yml template added #522
config.yml for issue template added #522
SECURITY.md added
Bug report template modified #522
thresholds_calc function updated
__midpoint_numeric_integral__ function updated
__trapezoidal_numeric_integral__ function updated
Diagrams updated #524
Document modified
Document build system updated
AUTHORS.md updated
README.md modified
Test system modified #498
Python 3.12 added to test.yml #523
Python 3.13 added to test.yml
Warning and error messages updated
pycm_util.py renamed to utils.py
pycm_test.py renamed to basic_test.py
pycm_profile.py renamed to profile.py
pycm_param.py renamed to params.py
pycm_overall_func.py renamed to overall_funcs.py
pycm_output.py renamed to output.py
pycm_obj.py renamed to cm.py
pycm_multilabel_cm.py renamed to multilabel_cm.py
pycm_interpret.py renamed to interpret.py
pycm_handler.py renamed to handlers.py
pycm_error.py renamed to errors.py
pycm_distance.py renamed to distance.py
pycm_curve.py renamed to curve.py
pycm_compare.py renamed to compare.py
pycm_class_func.py renamed to class_funcs.py
pycm_ci.py renamed to ci.py

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 1 year ago

PyCM - Version 4.0

pycmMultiLabelError class added #211
MultiLabelCM class added #211
get_cm_by_class method added #211
get_cm_by_sample method added #211
__mlcm_vector_handler__ function added #211
__mlcm_assign_classes__ function added #211
__mlcm_vectors_filter__ function added #211
__set_to_multihot__ function added #211
deprecated function added #499
Document modified #496
README.md modified
Example-4 modified #496
Test system modified
Python 3.5 support dropped

Acknowledgment

This version has been funded by the NLnet foundation

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 2 years ago

PyCM - Version 3.9

OVERALL_PARAMS dictionary added
__imbalancement_handler__ function added
vector_serializer function added
NPV micro/macro added #435
log_loss method added #387
23 new distance/similarity added #349 #350
1. Dennis
2. Digby
3. Dispersion
4. Doolittle
5. Eyraud
6. Fager & McGowan
7. Faith
8. Fleiss-Levin-Paik
9. Forbes I
10. Forbes II
11. Fossum
12. Gilbert & Wells
13. Goodall
14. Goodman & Kruskal's Lambda
15. Goodman & Kruskal Lambda-r
16. Guttman's Lambda A
17. Guttman's Lambda B
18. Hamann
19. Harris & Lahey
20. Hawkins & Dotson
21. Kendall's Tau
22. Kent & Foster I
23. Kent & Foster II
metrics_off parameter added to ConfusionMatrix __init__ method #341
CLASS_PARAMS changed to a dictionary
Code style modified
sort parameter added to relabel method #412
Document modified
CONTRIBUTING.md updated
codecov removed from dev-requirements.txt #492
Test system modified #488 #492

Acknowledgment

This version has been funded by the NLnet foundation

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 2 years ago

PyCM - Version 3.8

distance method added #349 #350
__contains__ method added
__getitem__ method added
Goodman-Kruskal's Lambda A benchmark added
Goodman-Kruskal's Lambda B benchmark added
Krippendorff's Alpha benchmark added
Pearson's C benchmark added
30 new distance/similarity added #349 #350
1. AMPLE
2. Anderberg's D
3. Andres & Marzo's Delta
4. Baroni-Urbani & Buser I
5. Baroni-Urbani & Buser II
6. Batagelj & Bren
7. Baulieu I
8. Baulieu II
9. Baulieu III
10. Baulieu IV
11. Baulieu V
12. Baulieu VI
13. Baulieu VII
14. Baulieu VIII
15. Baulieu IX
16. Baulieu X
17. Baulieu XI
18. Baulieu XII
19. Baulieu XIII
20. Baulieu XIV
21. Baulieu XV
22. Benini I
23. Benini II
24. Canberra
25. Clement
26. Consonni & Todeschini I
27. Consonni & Todeschini II
28. Consonni & Todeschini III
29. Consonni & Todeschini IV
30. Consonni & Todeschini V
relabel method sort bug fixed
README.md modified
Compare overall benchmarks default weights updated
Document modified
Test system modified

Acknowledgment

This version has been funded by the NLnet foundation

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 3 years ago

PyCM - Version 3.7

Curve class added #355
ROCCurve class added #355
PRCurve class added #355
pycmCurveError class added #355
CONTRIBUTING.md updated
matrix_params_calc function optimized
README.md modified
Document modified
Test system modified
Python 3.11 added to test.yml

Acknowledgment

This version has been funded by the NLnet foundation and Python Software Foundation (PSF)

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 3 years ago

PyCM - Version 3.6

Hamming distance added #350
Braun-Blanquet similarity added #349
classes parameter added to matrix_params_from_table function
Matrices with numpy.integer elements are now accepted
Arrays added to matrix parameter accepting formats #402
Website changed to http://www.pycm.io
Document modified
README.md modified

Acknowledgment

This version has been funded by the NLnet foundation

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 3 years ago

PyCM - Version 3.5

Anaconda workflow added
Custom iterating setting added #409
Custom casting setting added #409
plot method updated #408
class_statistics function modified
overall_statistics function modified
BCD_calc function modified
CONTRIBUTING.md updated
CODE_OF_CONDUCT.md updated #399
Document modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 3 years ago

PyCM - Version 3.4

Colab badge added #389
Discord badge added #397
brier_score method added #219
J (Jaccard index) section in Document.ipynb updated #401
save_obj method updated #219
Python 3.10 added to test.yml #391
Example-3 updated #405
Docstrings of the functions updated #345
CONTRIBUTING.md updated #345

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 4 years ago

PyCM - Version 3.3

__compare_weight_handler__ function added #347
is_imbalanced parameter added to ConfusionMatrix __init__ method #276
class_benchmark_weight and overall_benchmark_weight parameters added to Compare __init__ method #347
statistic_recommend function modified #276
Compare weight parameter renamed to class_weight #347
Document modified
License updated
AUTHORS.md updated
README.md modified
Block diagrams updated

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 4 years ago

PyCM - Version 3.2

classes_filter function added #358
classes parameter added to matrix_params_calc function #358
classes parameter added to __obj_vector_handler__ function #358
classes parameter added to ConfusionMatrix __init__ method #358
name parameter removed from html_init function
shortener parameter added to html_table function #364
shortener parameter added to save_html method #364
Document modified
HTML report modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 4 years ago

PyCM - Version 3.1

requirements-splitter.py added
sensitivity_index method added #357
Test system modified #361
overall_statistics function modified #346
HTML report modified #367
Document modified
References format updated #173
CONTRIBUTING.md updated

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 5 years ago

PyCM - Version 3.0

plot_test.py added #330
axes_gen function added #330
add_number_label function added #330
plot method added #330
combine method added #326
matrix_combine function added #326
Document modified
README.md modified
Example-2 deprecated #330
Example-7 deprecated #330
Error messages modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 5 years ago

PyCM - Version 2.9

notebook_check.py added #335
to_array method added #328
__copy__ method added #327
copy method added #327
average method refactored #332

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 5 years ago

PyCM - Version 2.8

label_map attribute added #256 #323
positions attribute added #256
position method added #256
Krippendorff's Alpha added #313
Aickin's Alpha added #317
weighted_alpha method added #313
Single class bug fixed #310
CLASS_NUMBER_ERROR error type changed to pycmMatrixError
relabel method bug fixed #323
Document modified
README.md modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 5 years ago

PyCM - Version 2.7

average method added #299
weighted_average method added #274
weighted_kappa method added #243
pycmAverageError class added #274 #299
Bangdiwala's B added #303
MATLAB examples added #268
Github action added #297
Document modified
README.md modified
relabel method bug fixed #293
sparse_table_print function bug fixed #293
matrix_check function bug fixed
Minor bug in Compare class fixed #294
Class names mismatch bug fixed #293

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 5 years ago

PyCM - Version 2.6

custom_rounder function added #279
complement function added
sparse_matrix attribute added #185
sparse_normalized_matrix attribute added #185
Net benefit (NB) added #264
Yule's Q interpretation (QI) added #267
Adjusted Rand index (ARI) added #270
TNR micro/macro added #284
FPR micro/macro added #284
FNR micro/macro added #284
sparse parameter added to print_matrix,print_normalized_matrix and save_stat methods #185
header parameter added to save_csv method #282
Handler functions moved to pycm_handler.py
Error objects moved to pycm_error.py
Verified tests references updated
Verified tests moved to verified_test.py
Test system modified
CONTRIBUTING.md updated
Namespace optimized
README.md modified #266
Document modified
print_normalized_matrix method modified #279
normalized_table_calc function modified #279
setup.py modified
summary mode updated #284
Dockerfile updated
Python 3.8 added to .travis.yaml and appveyor.yml

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 6 years ago

PyCM - Version 2.5

__version__ variable added #241
Individual classification success index (ICSI) added #238
Classification success index (CSI) added #238
Example-8 (Confidence interval) added #237
install.sh added
autopep8.sh added
Dockerfile added
CI method added (supported statistics : ACC,AUC,Overall ACC,Kappa,TPR,TNR,PPV,NPV,PLR,NLR,PRE) #237
test.sh moved to .travis folder
Python 3.4 support dropped
Python 2.7 support dropped
AUTHORS.md updated
save_stat,save_csv and save_html methods Non-ASCII character bug fixed #246
Mixed type input vectors bug fixed #240
CONTRIBUTING.md updated #245
Example-3 updated #239
README.md modified #248
Document modified #248
CI attribute renamed to CI95 #237
kappa_se_calc function renamed to kappa_SE_calc #237
se_calc function modified and renamed to SE_calc #237
CI/SE functions moved to pycm_ci.py #237
Minor bug in save_html method fixed

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 6 years ago

PyCM - Version 2.4

Tversky index (TI) added #214
Area under the PR curve (AUPR) added #216
FUNDING.yml added
AUC_calc function modified
Document modified #225
summary parameter added to save_html,save_stat,save_csv and stat methods #217
sample_weight bug in numpy array format fixed #227
Inputs manipulation bug fixed #226
Test system modified #229 @sadrasabouri
Warning system modified #228
alt_link parameter added to save_html method and online_help function #232
Compare class tests moved to compare_test.py
Warning tests moved to warning_test.py

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 6 years ago

PyCM - Version 2.3

Adjusted F-score (AGF) added #209
Overlap coefficient (OC) added #212
Otsuka-Ochiai coefficient (OOC) added #213
save_stat and save_vector parameters added to save_obj method #210
Document modified #221
README.md modified
Parameters recommendation for imbalance dataset modified
Minor bug in Compare class fixed
pycm_help function modified
Benchmarks color modified #221

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 6 years ago

PyCM - Version 2.2

Negative likelihood ratio interpretation (NLRI) added
Cramer's benchmark (SOA5) added
Matthews correlation coefficient interpretation (MCCI) added #204
Matthews's benchmark (SOA6) added #204
F1 macro added
F1 micro added
Accuracy macro added #205
Compare class score calculation modified
Parameters recommendation for multi-class dataset modified
Parameters recommendation for imbalance dataset modified
README.md modified
Document modified
Logo updated

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 6 years ago

PyCM - Version 2.1

Adjusted geometric mean (AGM) added #177
Yule's Q (Q) added #193
Compare class and parameters recommendation system block diagrams added #192
Document links bug fixed #194
Document modified #173

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 6 years ago

PyCM - Version 2.0

G-Mean (GM) added #178
Index of balanced accuracy (IBA) added #176
Optimized precision (OP) added #152
Pearson's C (C) added #180
Compare class added #111
Parameters recommendation warning added #174
ConfusionMatrix equal method added #181
Document modified #173
stat_print function bug fixed
table_print function bug fixed
Beta parameter renamed to beta (F_calc function & F_beta method)
Parameters recommendation for imbalance dataset modified
normalize parameter added to save_html method #183
pycm_func.py splitted into pycm_class_func.py and pycm_overall_func.py
vector_filter,vector_check,class_check and matrix_check functions moved to pycm_util.py
RACC_calc and RACCU_calc functions exception handler modified #187
Docstrings modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 6 years ago

PyCM - Version 1.9

Automatic/Manual (AM) added #144
Bray-Curtis dissimilarity (BCD) added #143
CODE_OF_CONDUCT.md added #151
ISSUE_TEMPLATE.md added #156
PULL_REQUEST_TEMPLATE.md added #156
CONTRIBUTING.md added #155
X11 color names support for save_html method added #146
Parameters recommendation system added #112
Warning message for high dimension matrix print added #120
Interactive notebooks section (binder) added #142
save_matrix and normalize arguments added to save_csv method #120
README.md modified
Document modified #149 #164
ConfusionMatrix.__init__ optimized #145
Document and examples output files moved to different folders #149
Test system modified #138
relabel method bug fixed #167

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 7 years ago

PyCM - Version 1.8

Lift Score (LS) added #128
color argument added to save_html method #130
version_check.py added
Error messages modified #132
Document modified #131
Website changed to http://www.pycm.ir
Interpretation functions moved to pycm_interpret.py
Utility functions moved to pycm_util.py
Unnecessary else and elif removed
== changed to is

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi almost 7 years ago

PyCM - Version 1.7

Gini Index (GI) added #119
Example-7 added #121
pycm_profile.py added
class_name argument added to stat,save_stat,save_csv and save_html methods #118
overall_param and class_param arguments empty list bug fixed #118
matrix_params_calc, matrix_params_from_table and vector_filter functions optimized #118
overall_MCC_calc, CEN_misclassification_calc and convex_combination functions optimized #118
Document modified #124

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.6

AUC Value Interpretation (AUCI) added #114
Example-6 added #113
Anaconda cloud package added #90
overall_param and class_param arguments added to stat,save_stat and save_html methods
class_param argument added to save_csv method
_ removed from overall statistics names
README.md modified
Document modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.5

Relative Classifier Information (RCI) added #82
Discriminator Power (DP) added #104
Youden's Index (Y) added #105
Discriminant Power Interpretation (DPI) added #107
Positive Likelihood Ratio Interpretation (PLRI) added #106
__len__ method added
relabel method added #98
__class_stat_init__ function added
__overall_stat_init__ function added
matrix attribute added #99
normalized_matrix attribute added #99
normalized_table attribute added #99
Python 3.7 added to .travis.yaml & appveyor.yml
README.md modified
Document modified
LR+ renamed to PLR
LR- renamed to NLR
normalized_matrix method renamed to print_normalized_matrix #99
matrix method renamed to print_matrix #99
entropy_calc fixed
cross_entropy_calc fixed
conditional_entropy_calc fixed
print_table bug for large numbers fixed
JSON key bug in save_obj fixed #108
transpose bug in save_obj fixed #108

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.4

Area Under Curve added #83
AUNU added #83
AUNP added #83
Class Balance Accuracy added #81
Global Performance Index (RR) added #80
Overall MCC added #75
Distance index (dInd) added #84
Similarity index (sInd) added #84
one_vs_all added #76
dev-requirements.txt added
README.md modified #85
Document modified #85
save_stat modified #78
requirements.txt modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.3

Confusion Entropy added #72
Overall Confusion Entropy added #72
Modified Confusion Entropy added #73
Overall Modified Confusion Entropy added #73
Information Score added #71
README.md modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.2

NIR (No Information Rate) added
P-Value added
sample_weight added
transpose added
README.md modified
Key error in some parameters fixed
OSX env added to .travis.yml

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi about 7 years ago

PyCM - Version 1.1

Zero-one loss added
Support added
online_help function added
README.md modified
html_table function modified
table_print function modified
normalized_table_print function modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

PyCM - Version 1.0

Hamming loss added
README.md modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

PyCM - Version 0.9.5

Obj load added
Obj save added
Example-4 added
README.md modified
Block diagram updated

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

PyCM - Version 0.9

Activation Threshold added
Example-3 added
Jaccard index added
Overall Jaccard index added
README.md modified
setup.py modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

PyCM - Version 0.8.6

Example section in document added
Python 2.7 CI added
JOSS paper pdf added
Cite section modified
ConfusionMatrix docstring modified
round function changed to numpy.around
README.md modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

PyCM - Version 0.8.5

Confusion matrix size in HTML report modified
Example-1 (Comparison of three different classifiers) added
Example-2 (How to plot via matplotlib) added
ConfusionMatrix docstring added
JOSS paper added
Test system modified
README.md modified

Scientific Software - Peer-reviewed - Python
Published by sepandhaghighi over 7 years ago

1.New parameters added : * Goodman and Kruskal's lambda B * Goodman and Kruskal's lambda A * Cross Entropy * Conditional Entropy * Joint Entropy * Reference Entropy * Response Entropy * Kullback-Liebler divergence * Mutual Information * Kappa Unbiased * Kappa No Prevalence * Random Accuracy Unbiased

Direct ConfusionMatrix added
pycmVectorError class added
pycmMatrixError class added
Support numpy arrays
pycmError class removed