Recent Releases of hs-rats-genotyping-pipeline
hs-rats-genotyping-pipeline - The third version of Palmer Lab's HS Rats Genotyping Pipeline using ddGBS and lcWGS
The third version of Palmer Lab's HS Rats Genotyping Pipeline v3.0.0. Acceptable sequencing data: Riptide library prep lc-WGS, and ddGBS sequences Genotype calling and imputation: STITCH niteration=2 with a high quality consensus reference panel Variants filtering: Keep high confident SNPs based on INFO score, and discard some identified BAD SNPs positions
- Shell
Published by Deeeeen over 2 years ago
hs-rats-genotyping-pipeline - v2.0.0 - The second version of Palmer Lab's HS Rats Lc-WGS Genotyping Pipeline
The second version of Palmer Lab's HS Rats Lc-WGS Genotyping Pipeline v2.0.0. Acceptable sequencing data: Riptide library prep lc-WGS Genotype calling and imputation: STITCH niteration=2 with a improved consensus reference panel Variants filtering: Keep high confident SNPs based on INFO score, and discard some identified BAD SNPs positions
- Shell
Published by Deeeeen over 3 years ago
hs-rats-genotyping-pipeline - v1.0.0 - The very first version of Palmer Lab's HS Rats Genotyping Pipeline
The very first version of Palmer Lab's HS Rats Genotyping Pipeline v1.0.0. Acceptable sequencing data: Riptide library prep lc-WGS Genotype calling and imputation: STITCH niteration=1 with a reference panel + BEAGLE with a genetic map
- Shell
Published by Deeeeen over 4 years ago