triplecolocalization
Program used to calculate the colocalization between three color channels during immunofluoresence micoscopy. Program will calculate the percentage of overlap of channel 1 to both channels 2 and 3 together. Output colocalization is based on Manders' Colocalization Coefficient
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.3%) to scientific vocabulary
Repository
Program used to calculate the colocalization between three color channels during immunofluoresence micoscopy. Program will calculate the percentage of overlap of channel 1 to both channels 2 and 3 together. Output colocalization is based on Manders' Colocalization Coefficient
Basic Info
- Host: GitHub
- Owner: amorante1
- Language: Python
- Default Branch: master
- Size: 17.6 KB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 1
- Releases: 1
Metadata Files
README.md
TripleColocalization
Program used to calculate the colocalization between three color channels during immunofluoresence micoscopy. Program will calculate the percentage of overlap of channel 1 to both channels 2 and 3 together. Output colocalization is based on Manders' Colocalization Coefficient. To use this file:
- External libraries needed: PIL, xlwt, xlrd, xlutils
- Create an empty folder anywhere on computer.
- Input your three individual color channel images into the folder.
- Start the file and, when prompted, select the folder that contains the three images to analyze.
- Adjust the image brightness as necessary with slider bar and press Update button.
- Press Analyze button.
- Excel sheet should autogenerate in Colocalization folder with mM1, mM2, and mM3 coefficients.
Owner
- Name: Anthony V. Morante
- Login: amorante1
- Kind: user
- Company: Fordham University
- Repositories: 1
- Profile: https://github.com/amorante1
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Morante
given-names: Anthony V.
orcid: https://orcid.org/0000-0001-8295-8682
title: TripleColocalization
version: 1.1
doi: 10.5281/zenodo.7368107
date-released: 2022-11-27
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1