https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
Science Score: 8.0%
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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✓Institutional organization owner
Organization hbclab has institutional domain (psychology.uiowa.edu) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Last synced: 8 months ago
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Repository
rename the old fmriprep (< v1.2.0) files
Basic Info
- Host: GitHub
- Owner: HBClab
- License: mit
- Language: Jupyter Notebook
- Default Branch: master
- Size: 16.6 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created about 7 years ago
· Last pushed over 6 years ago
https://github.com/HBClab/renameOldFMRIPREP/blob/master/
# Rename Old FMRIPREP (< v1.2.0) files
This script updates the names of _some_ of the fmriprep files.
Currently I'm ignoring figures.
Ideally, I will be covering all anatomical and functional image outputs.
## Quickstart
1. clone this repository
```bash
git clone https://github.com/HBClab/renameOldFMRIPREP.git
```
2. install the requirements
```bash
pip install -r requirements.txt
```
3. run the command help
```bash
./rename_old_fmriprep/conform_fmriprep.py -h
```
4. run the command on your data
```bash
./rename_old_fmriprep/conform_fmriprep.py \
-i /path/to/old/fmriprep \
-o /path/to/new/fmriprep \
-d /path/to/dataset/description/dataset_description.json
```
The `dataset_description.json` is a json file that contains
information about the dataset and the fmriprep version you ran
previously
```python
{
"Name": "test_data",
"BIDSVersion": "1.0.0",
"PipelineDescription": {"Name": "fmriprep", "Version": "1.1.8"}
}
```
Now your data _should_ be bids derivatives compliant!
Please let me know if something does not work properly in [the issues](https://github.com/HBClab/renameOldFMRIPREP/issues)
Owner
- Name: Health, Brain, & Cognition Lab
- Login: HBClab
- Kind: organization
- Website: https://psychology.uiowa.edu/health-brain-cognition-lab
- Repositories: 3
- Profile: https://github.com/HBClab