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Open Source Science

https://github.com/hbpmedical/mip-deployment

Deploy the Medical Informatics Platform

https://github.com/hbpmedical/mip-deployment

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.3%) to scientific vocabulary

Keywords

docker
Last synced: 6 months ago · JSON representation

Repository

Deploy the Medical Informatics Platform

Basic Info
Statistics
  • Stars: 3
  • Watchers: 7
  • Forks: 4
  • Open Issues: 1
  • Releases: 0
Topics
docker
Created over 8 years ago · Last pushed 7 months ago
Metadata Files
Readme

README.md

Medical Informatics Platform (MIP)

Deployment Documentation Contents

  1. Requirements for new data, to join the federation
  2. Deployment Requirements
  3. Deployment Components
  4. Setting up the data
  5. Deploying the stack
  6. Stack recovery
  7. Configuring new users
  8. Authorization for new user
  9. VPN Setup
  10. Backup and Recovery

Acknowledgement

This project/research received funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).

Owner

  • Name: HBP Medical Informatics Platform
  • Login: HBPMedical
  • Kind: organization
  • Email: support@ebrains.eu
  • Location: CHUV, Lausanne, Switzerland

GitHub Events

Total
  • Delete event: 12
  • Push event: 89
  • Pull request review event: 5
  • Pull request review comment event: 1
  • Pull request event: 10
  • Create event: 12
Last Year
  • Delete event: 12
  • Push event: 89
  • Pull request review event: 5
  • Pull request review comment event: 1
  • Pull request event: 10
  • Create event: 12

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 0
  • Total pull requests: 11
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.09
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 6
  • Average time to close issues: N/A
  • Average time to close pull requests: about 2 months
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • ThanKarab (6)
  • KFilippopolitis (5)
Top Labels
Issue Labels
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Dependencies

tests/backend_components/poetry.lock pypi
  • click 8.1.3 develop
  • invoke 1.7.3 develop
  • mipdb 1.0.0 develop
  • mypy-extensions 0.4.3 develop
  • numpy 1.24.1 develop
  • pandas 1.5.2 develop
  • pandera 0.13.4 develop
  • pydantic 1.10.4 develop
  • python-dateutil 2.8.2 develop
  • pytz 2022.7.1 develop
  • six 1.16.0 develop
  • sqlalchemy 1.3.24 develop
  • sqlalchemy-monetdb 1.0.0 develop
  • typing-extensions 4.4.0 develop
  • typing-inspect 0.8.0 develop
  • wrapt 1.14.1 develop
  • atomicwrites 1.4.1
  • attrs 22.2.0
  • certifi 2022.12.7
  • chardet 4.0.0
  • colorama 0.4.6
  • flake8 3.9.2
  • future 0.18.3
  • idna 2.10
  • iniconfig 2.0.0
  • mccabe 0.6.1
  • packaging 23.0
  • pluggy 0.13.1
  • py 1.11.0
  • pycodestyle 2.7.0
  • pyflakes 2.3.1
  • pymonetdb 1.4.1
  • pytest 6.2.4
  • requests 2.25.1
  • toml 0.10.2
  • urllib3 1.26.14
tests/backend_components/pyproject.toml pypi
  • invoke ^1.7.1 develop
  • mipdb 1.0.0 develop
  • flake8 3.9.2
  • pymonetdb ~1.4.1
  • pytest 6.2.4
  • python ^3.8
  • requests 2.25.1
.github/workflows/portalbackend-integration-tests.yml actions
  • actions/cache v2 composite
  • actions/checkout v1 composite
  • actions/setup-python v2 composite
  • jakejarvis/wait-action master composite
  • snok/install-poetry v1 composite
Federation/docker-compose.yml docker
  • hbpmip/create-databases 1.1.0
  • hbpmip/galaxy ${GALAXY}
  • hbpmip/gateway ${GATEWAY}
  • hbpmip/portal-backend ${PORTALBACKEND}
  • hbpmip/portal-frontend ${FRONTEND}
  • postgres 11.3-alpine
docker-compose.yml docker
  • bitnami/consul 1.8.3
  • hbpmip/create-databases 1.1.0
  • hbpmip/exareme ${EXAREME}
  • hbpmip/galaxy ${GALAXY}
  • hbpmip/gateway ${GATEWAY}
  • hbpmip/portal-backend ${PORTALBACKEND}
  • hbpmip/portal-frontend ${FRONTEND}
  • jboss/keycloak 15.0.2
  • postgres 11.3-alpine
  • postgres 12.2
tests/backend_components/docker-compose.yml docker
  • bitnami/consul 1.8.3
  • hbpmip/create-databases 1.1.0
  • hbpmip/exareme ${EXAREME}
  • hbpmip/portal-backend ${PORTALBACKEND}
  • madgik/mipengine_controller ${MIP_ENGINE}
  • madgik/mipengine_node ${MIP_ENGINE}
  • madgik/mipengine_rabbitmq ${MIP_ENGINE}
  • madgik/mipenginedb ${MIP_ENGINE}
  • postgres 11.3-alpine
tests/frontend_components/docker-compose.yml docker
  • hbpmip/gateway ${GATEWAY}
  • hbpmip/portal-frontend ${FRONTEND}
  • postgres latest