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suitpy

https://github.com/diedrichsenlab/suitpy

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 10 committers (10.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.2%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: DiedrichsenLab
  • License: other
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 67.2 MB
Statistics
  • Stars: 25
  • Watchers: 3
  • Forks: 7
  • Open Issues: 1
  • Releases: 12
Created over 5 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation Authors

README.rst 

SUITPy: Analysis and visualization of cerebellar imaging data.
==============================================================

The package provides some basic functionality of the original SUIT toolbox for Matlab (https://github.com/jdiedrichsen/suit).
Currently, only mapping of volume data to the flatmap and display of the flatmap are implemented.

Important links
---------------

- SUIT website: http://diedrichsenlab.org/imaging/suit.htm
- Official source code repository: https://github.com/SUITPy/
- HTML documentation (latest release): https://suitpy.readthedocs.io/

Dependencies
------------

The required dependencies to use the software are:

* python >= 3.6
* setuptools
* numpy >= 1.16
* nibabel >= 2.5
* pandas >= 0.24
* matplotlib >= 1.5.1
* scipy >=1.0
* neuroimagingtools >= 1.1.1

Install
-------

First make sure you have installed all the dependencies listed above.
Then you can install SUITPy by running the following command in
a command prompt::

    pip install -U --user SUITPy

More detailed instructions are available at
https://suitpy.readthedocs.io/en/latest/install.html


Licence and Acknowledgements
----------------------------
The Python version of the SUIT toolbox has been developed by the Diedrichsenlab including J. Diedrichsen, M. King, D. Zhi, C. Hernandez-Castillo, S. Witt and others. It is distributed under MIT License, meaning that it can be freely used and re-used, as long as proper attribution in form of acknowledgments and links (for online use) or citations (in publications) are given. The relevant references are:

SUIT normalisation and template:

- Diedrichsen, J. (2006). A spatially unbiased atlas template of the human cerebellum. Neuroimage. 33(1), 127-138. doi: 10.1016/j.neuroimage.2006.05.056

Surface-based representation and flatmap

- Diedrichsen, J. & Zotow, E. (2015). Surface-based display of volume-averaged cerebellar data. PLOSOne. doi: 10.1371/journal.pone.0133402

Owner

  • Name: Diedrichsen Lab
  • Login: DiedrichsenLab
  • Kind: organization
  • Email: joern.diedrichsen@googlemail.com
  • Location: Western University

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "Please cite this software as below."
authors:
- family-names: "Diedrichsen"
  given-names: "Jörn"
  orcid: "https://orcid.org/0000-0003-0264-8532"
- family-names: "King"
  given-names: "Maedbh"
  orcid: "https://orcid.org/0000-0001-5374-1011"
- family-names: "Zhi"
  given-names: "Da"
  orcid: "https://orcid.org/0000-0001-6023-6523"
title: "SUIT: A Python-based toolbox for cerebellar imaging analysis"
version: 1.3.0
date-released: 2023-10-08
url: "https://github.com/DiedrichsenLab/SUITPy"

GitHub Events

Total
  • Watch event: 5
  • Issue comment event: 1
  • Fork event: 2
Last Year
  • Watch event: 5
  • Issue comment event: 1
  • Fork event: 2

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 178
  • Total Committers: 10
  • Avg Commits per committer: 17.8
  • Development Distribution Score (DDS): 0.517
Top Committers
Name Email Commits
Joern Diedrichsen j****n@g****m 86
Maedbh King m****6@u****a 44
Jingyi Wu 8****8@u****m 24
eliu22 e****g@g****m 8
Maedbh King m****g@b****u 7
dependabot[bot] 4****]@u****m 3
Da Zhi d****i@u****a 2
Elaine Liu 5****2@u****m 2
lshahsha l****a@u****a 1
Pierre Bellec p****c@g****m 1
Committer Domains (Top 20 + Academic)
uwo.ca: 3 berkeley.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 3
  • Total pull requests: 7
  • Average time to close issues: 5 months
  • Average time to close pull requests: 3 months
  • Total issue authors: 3
  • Total pull request authors: 4
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.29
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 4
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 4.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • winsonfzyang (1)
  • milinkim (1)
Pull Request Authors
  • dependabot[bot] (4)
  • pbellec (1)
  • lshahsha (1)
  • maedbhk (1)
  • carobellum (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels
dependencies (4)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 77 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 8
  • Total maintainers: 1
pypi.org: suitpy

Mapping and plotting cerebellar fMRI data in Python

  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 77 Last month
Rankings
Dependent packages count: 10.1%
Forks count: 14.2%
Stargazers count: 15.6%
Average: 17.0%
Dependent repos count: 21.6%
Downloads: 23.6%
Maintainers (1)
jdiedrichsen
Last synced: 7 months ago

Dependencies

requirements-build-docs.txt pypi
  • coverage *
  • cython *
  • flake8 *
  • ipykernel *
  • joblib *
  • lxml *
  • matplotlib *
  • mkl *
  • nbsphinx *
  • nibabel *
  • numpy *
  • numpydoc *
  • pandas *
  • pillow *
  • plotly *
  • scipy *
  • sphinx >=1.4
  • sphinx-copybutton *
  • sphinx-gallery *
  • sphinxcontrib-bibtex *
requirements-dev.txt pypi
  • coverage * development
  • cython * development
  • joblib * development
  • matplotlib * development
  • nibabel * development
  • numpy * development
  • pandas * development
  • plotly * development
  • pytest >=3.9 development
  • pytest-cov * development
  • requests * development
  • scipy * development
requirements-min.txt pypi
  • joblib ==1.0.1
  • matplotlib ==3.4.2
  • nibabel ==3.2.1
  • numpy ==1.21.0
  • pandas ==0.25.0
  • scipy ==1.6.3
setup.py pypi
environment.yml pypi