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zincbinddb

The database and API backend for ZincBind - the database of zinc binding sites

https://github.com/samirelanduk/zincbinddb

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.5%) to scientific vocabulary

Keywords

api computational-biology database django graphql protein-structure structural-biology
Last synced: 6 months ago · JSON representation ·

Repository

The database and API backend for ZincBind - the database of zinc binding sites

Basic Info
Statistics
  • Stars: 16
  • Watchers: 3
  • Forks: 1
  • Open Issues: 4
  • Releases: 19
Topics
api computational-biology database django graphql protein-structure structural-biology
Created over 8 years ago · Last pushed 11 months ago
Metadata Files
Readme Citation

README.md

ZincBindDB

Build Status Coverage Status

About

ZincBindDB is a database of Zinc Binding Sites. It was made as part of my PhD, and is still maintained by me.

Together with ZincBindPredict (machine learning prediction of zinc binding using the data here) and ZincBindWeb (the website frontend) it comprises one of the three components of the overall ZincBind resource.

Owner

  • Name: Sam Ireland
  • Login: samirelanduk
  • Kind: user
  • Location: London, UK
  • Company: Goodwright

Software developer and PhD, specialising in Bioinformatics tools.

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Ireland"
  given-names: "S. M."
  orcid: "https://orcid.org/0000-0001-8248-7614"
- family-names: "Martin"
  given-names: "A. C. R."
  orcid: "https://orcid.org/0000-0002-2835-2572"
title: "ZincBindDB"
version: 1.0.0
doi: 10.1093/database/baz006
date-released: 2019-02-05
url: "https://github.com/samirelanduk/ZincBindDB"

GitHub Events

Total
  • Watch event: 1
  • Push event: 1
Last Year
  • Watch event: 1
  • Push event: 1

Issues and Pull Requests

Last synced: 12 months ago

All Time
  • Total issues: 19
  • Total pull requests: 7
  • Average time to close issues: 6 months
  • Average time to close pull requests: 3 months
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.16
  • Average comments per pull request: 0.86
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 7
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • samirelanduk (19)
Pull Request Authors
  • dependabot[bot] (7)
Top Labels
Issue Labels
bug (9) enhancement (6) css-ugliness (2)
Pull Request Labels
dependencies (7)

Dependencies

requirements.txt pypi
  • atomium >=1.0.2
  • django ==2.2.13
  • django_cors_headers *
  • graphene_django *
  • gunicorn *
  • kirjava *
  • python-coveralls *
  • requests *
  • tqdm *
Dockerfile docker
  • ubuntu latest build
docker-compose.yml docker
  • samirelanduk/zincbinddb_build latest
  • samirelanduk/zincbinddb_django latest
  • samirelanduk/zincbinddb_nginx latest