Finch - v0.6.2

Scientific Software - Peer-reviewed - Rust
Published by audy 12 months ago

Finch -

Make the sequence borrowed instead of owned

Scientific Software - Peer-reviewed - Rust
Published by Keats over 3 years ago

Finch - Version 0.4.3

Minor release that includes new no_strict=False parameter in sketch_file() Python binding.

Scientific Software - Peer-reviewed - Rust
Published by jairideout almost 4 years ago

Finch - Version 0.4.2

This is a maintenance release updating dependencies and the minimum required Rust version (now 1.49). There are no functional changes in this release.

Scientific Software - Peer-reviewed - Rust
Published by jairideout almost 4 years ago

Finch - Version 0.4.1

Scientific Software - Peer-reviewed - Rust
Published by jairideout almost 4 years ago

Finch - Version 0.3.0

Changes: - Better default distance calculation (support for the old calculation is available with --old-dist) - Support for scaled sketches - Adds a new, more compact binary format - Improved Python bindings and pre-built wheels (note that Finch isn't on PyPI yet because of a naming conflict) - Mash's distance calculation method has been dropped - Improved testing and code QC

Scientific Software - Peer-reviewed - Rust
Published by bovee over 6 years ago

Finch - Version 0.2.0

New features: - Code cleanliness: cargo fmt, cargo clippyd (mostly), and bumped to Rust Edition 2018 - Support for sketches extensions of JSON in the CLI - Preliminary Python bindings - Support for numValidKmers in Mash binary format (note Mash itself doesn't support this, but will read from these files as long as they don't add a different field down the road: related issue marbl/Mash#112)

Scientific Software - Peer-reviewed - Rust
Published by bovee about 7 years ago

Finch - Version v0.1.9

Fixes an issue with incomplete FASTQ parsing.

Scientific Software - Peer-reviewed - Rust
Published by bovee over 7 years ago

Finch - Version 0.1.8

Fixes error parsing FASTQs with newlines at the end.

Scientific Software - Peer-reviewed - Rust
Published by bovee almost 8 years ago

Finch - Version v0.1.7

Update dependencies including needletail to v0.2.0. This allows finch to read bz, xz, and zip files (in addition to gz and uncompressed files) and allows "empty" records to be present (e.g. a FASTA file like ">test\n\n>newRecord").

Scientific Software - Peer-reviewed - Rust
Published by bovee almost 8 years ago

Finch - Version v0.1.6

Add support for Mash's binary format.

Scientific Software - Peer-reviewed - Rust
Published by bovee about 8 years ago

Finch - JOSS Paper

This is the version of finch-rs that was reviewed for our JOSS submission. It's identical to v0.1.5 with the exception of edits to our paper so if you're looking for downloadable executables for that version, please look in that release on GitHub or the corresponding release on Crates.io.

Scientific Software - Peer-reviewed - Rust
Published by bovee over 8 years ago

Finch - Version v0.1.5

Ergonomic improvements & and a large speed-up on sketch file loading.

Scientific Software - Peer-reviewed - Rust
Published by bovee over 8 years ago

Finch - Version 0.1.4

Fixes a bug with setting filtering thresholds on files with heavy adapter contamination

Scientific Software - Peer-reviewed - Rust
Published by bovee over 8 years ago

Finch - Version v0.1.2

Scientific Software - Peer-reviewed - Rust
Published by bovee almost 9 years ago

Finch - Version 0.1.0

First release!

Scientific Software - Peer-reviewed - Rust
Published by bovee about 9 years ago