gs-svocc
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 7 DOI reference(s) in README -
○Academic publication links
-
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Keywords
Repository
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
Basic Info
- Host: GitHub
- Owner: jrfep
- License: cc-by-4.0
- Language: R
- Default Branch: dont-panic
- Homepage: https://osf.io/6qtep/
- Size: 17.4 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
Resources selection model application for wildlife monitoring in Gran Sabana, Venezuela
Fit a Zero Inflated Binomial model to accumulated evidence of species detection from on camera and off camera records.
Repository structure
This repository includes scripts that can be run within R or using Rscript. Use the Rproj file to open the project in RStudio or VScode.
The R folder includes three scripts and a markdown file that describes the workflow to run the scripts using Rscript.
Data is downloaded and results saved under the Rdata and output folders. These folders are not included in version control. Final results will be uploaded to an OSF repository.
Folders doc and fig include documentation of data and steps of the analysis:
- A dashboard sumamrising sampling effort per region, blocks and cells
- A document with the main results of the analysis for all species combined
Reproducible research
We aim to provide all data and code necessary to reproduce our analysis and replicate our results.
Documentation and comments in code have been written in English and/or Spanish.
The data used in this analysis can be downloaded from:
- Ferrer-Paris, José R.; Stachowicz, Izabela (2022). Camera trap data and spatial covariates for monitoring vertebrates in the Gran Sabana, Venezuela. figshare. Dataset. https://doi.org/10.6084/m9.figshare.21174589.v1
This code repository is linked to the following component project:
- Ferrer-Paris, J. R., Stachowicz, I., & Sánchez-Mercado, A. (2023, August 20). Resources selection model application for wildlife monitoring in Gran Sabana, Venezuela. https://doi.org/10.17605/OSF.IO/6QTEP
Related repositories and resources are available under the following overarching project:
- Stachowicz, I., Ferrer-Paris, J. R., & Sánchez-Mercado, A. (2023, August 21). Monitoring vertebrates with camera traps in the Gran Sabana, Venezuela. https://doi.org/10.17605/OSF.IO/EY8FT
References
Our approach is based on:
Solymos, P., Lele, S. R. 2016. Revisiting resource selection probability functions and single-visit methods: clarification and extensions. Methods in Ecology and Evolution, 7, 196–205. doi:10.1111/2041-210X.12432
Owner
- Name: José R. Ferrer Paris
- Login: jrfep
- Kind: user
- Location: Australia
- Company: @unsw-edu-au
- Website: http://uat.bees.unsw.edu.au/our-people/jose-ferrer
- Twitter: jrfep
- Repositories: 40
- Profile: https://github.com/jrfep
Research Fellow at the University of New South Wales. Member of the IUCN @red-list-ecosystem Working Group
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Ferrer-Paris"
given-names: "José R."
country: "AU"
orcid: https://orcid.org/0000-0002-9554-3395
- family-names: "Stachowicz"
given-names: "Izabela"
country: "PO"
orcid: https://orcid.org/0000-0002-9721-7067
- family-names: "Sanchez-Mercado"
given-names: "Ada"
orcid: https://orcid.org/0000-0001-5030-2128
country: "AU"
title: "Code and data for: Resources selection model application for wildlife monitoring in Gran Sabana, Venezuela"
version: v1.0
date-released: 2023-08-19
doi: 10.17605/OSF.IO/6QTEP
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0