Visualizing genome synteny with xmatchview - xmatchview v1.2.5

Adjustments to suggested scaling to factor in border around genomic features

Scientific Software - Peer-reviewed - Python
Published by warrenlr about 5 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.2.4

Includes error handling when scaling isn't sufficient to keep genomic features within plot bounds

Scientific Software - Peer-reviewed - Python
Published by warrenlr about 5 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.2.3

-xmatchview.py, xmatchview-conifer.py, xmatchview-hive.py code refactored for python 3

Scientific Software - Peer-reviewed - Python
Published by warrenlr over 5 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.2.2

-python implementation of xmatchview-hive -offers more control over the alignments plotted -plot features in gff

Scientific Software - Peer-reviewed - Python
Published by warrenlr almost 6 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.2.1

-Initial release of xmatchview-hive, for 3 way [cross_match/minimap2] alignment visualization with hive plots

Scientific Software - Peer-reviewed - Python
Published by warrenlr almost 6 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.2.0

-Bug fixes -Aesthetic improvements to both xmatchview and xmatchview-conifer -Support for GFF files -Support for Multi-FASTA files

Scientific Software - Peer-reviewed - Python
Published by warrenlr about 6 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.1.1

WHAT'S NEW in v1.1.1 -Bug fixes (will now return an error when the alignment files are empty [instead of plotting empty graphs])

WHAT'S NEW in v1.1 -Bug fixes (the forward synteny blocks were always printed, regardless of specified filters. This is fixed in both xmatchview and xmatchview-conifer v1.1)

Scientific Software - Peer-reviewed - Python
Published by warrenlr over 6 years ago

Visualizing genome synteny with xmatchview - xmatchview v1.0

version associated with the peer-reviewed JOSS (Journal of Open Source Software) publication

Scientific Software - Peer-reviewed - Python
Published by warrenlr almost 8 years ago

Visualizing genome synteny with xmatchview - xmatchview v0.3.2

bug fixes, streamlined code, added -p option for providing a font path

Scientific Software - Peer-reviewed - Python
Published by warrenlr about 8 years ago

Visualizing genome synteny with xmatchview - xmatchview v0.3.1

Scientific Software - Peer-reviewed - Python
Published by warrenlr about 8 years ago