Data

Tools

Indexes

Applications

Experiments

Open Source Science

jax-smfsb

jax-smfsb: A Python library for stochastic systems biology modelling and inference - Published in JOSS (2025)

https://github.com/darrenjw/jax-smfsb

Science Score: 87.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 11 months ago · JSON representation

JOSS Publication

jax-smfsb: A Python library for stochastic systems biology modelling and inference
Published
February 05, 2025
DOI
Volume 10, Issue 106, Page 7491
Authors
Darren J. Wilkinson
Department of Mathematical Sciences, University of Durham, UK
Editor
Julia Romanowska ORCID
Tags
JAX systems biology stochastic modelling reaction networks SBML Gillespie algorithm Bayesian inference high-performance parallel GPU reaction-diffusion
View PDF Review Thread Software Archive

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • darrenjw (3)
  • cthoyt (2)
  • zeyus (1)
  • jromanowska (1)
Pull Request Authors
  • cthoyt (2)
  • darrenjw (2)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 23 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 17
  • Total maintainers: 1
pypi.org: jax-smfsb

Python+JAX code relating to the textbook, Stochastic modelling for systems biology, third edition

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 5 Last month
Rankings
Dependent packages count: 9.5%
Average: 36.3%
Dependent repos count: 63.0%
Maintainers (1)
darrenjw
Last synced: 11 months ago
pypi.org: jsmfsb

Python+JAX code relating to the textbook, Stochastic modelling for systems biology, third edition

  • Versions: 16
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 18 Last month
Rankings
Dependent packages count: 9.5%
Average: 36.3%
Dependent repos count: 63.0%
Maintainers (1)
darrenjw
Last synced: 11 months ago