phyphy - Phyphy v 0.4.3

Includes a patch for FUBAR version 2.1, introduced in HyPhy version 2.3.9.

Scientific Software - Peer-reviewed - Python
Published by sjspielman over 7 years ago

phyphy - Phyphy v0.4.2

This release addresses a bug where nexus files were, under certain circumstances, read incorrectly when provided as a data argument to an Analysis method.

The argument nexus=True is now required when this type of input is provided, i.e.: ```

required here:

myfel = FEL(data = "data.nex", nexus=True)

but not required here:

myfel = FEL(alignment = "data.nex", tree = "data.tre")

```

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago

phyphy - Phyphy v0.4.1: Official Release

This version marks the official, published release of phyphy.

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago

phyphy - phyphy v0.4

Fixes a bug which produced incorrect output CSV when a non-comma delimiter is specified.

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago

phyphy - phyphy v0.3

This release addresses a bug where executed LEISR instances could not be transferred to Extractor.

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago

phyphy - phyphy v0.2

Includes new Extractor() methods for obtaining information from the JSON input field. Methods documented in README and API.

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago

phyphy - phyphy v0.1

Initial release of phyphy. Have at it, world!

Scientific Software - Peer-reviewed - Python
Published by sjspielman about 8 years ago