High-Dimensional Integrator

High-Dimensional Integrator - Published in JOSS (2017)

https://github.com/iljah/hdintegrator

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 4 DOI reference(s) in README and JOSS metadata
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Academic publication links
Links to: joss.theoj.org
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Committers with academic emails
1 of 3 committers (33.3%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
Published in Journal of Open Source Software

Scientific Fields

Sociology Social Sciences - 64% confidence

Last synced: 4 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: iljah
License: gpl-3.0
Language: C
Default Branch: master
Size: 99.6 KB

Statistics

Stars: 0
Watchers: 1
Forks: 1
Open Issues: 0
Releases: 0

Created almost 9 years ago · Last pushed almost 8 years ago

Metadata Files

Readme License Codemeta

HDIntegrator

High-Dimensional Integrator (HDIntegrator) is a program for parallel numerical integration of functions in arbitrary number of dimensions, see paper.md for a general overview.

Installation

Installation and testing is detailed in the INSTALL.md file but at least Python 3 and an implementation of Message Passing Interface is required along with mpi4py and the NetworkX python package. Separate programs are used for evaluating integrals numerically and are provided in the integrands directory. These can have their own prerequisites as detailed in INSTALL.

Usage

To get a list of mandatory and optional arguments supported by the program run hdintegrator.py with --help argument: ./hdintegrator.py --help (or hdintegrator.py --help if you installed it through pip).

In general the program must be run with at least two MPI processes and must include a serial program to use as an integrand as well as the number of dimensions to integrate in:

mpiexec -n 5 ./hdintegrator.py --integrand integrands/N-sphere.py --dimensions 2

The result consists of one line with the integral's value, absolute error and fraction of volume relative to total volume in which the integrand failed to return a value:

0.523598776383549 1.453150932917424e-08 0.0

Input and output formats

To define your own integral you must write a program that will be called by hdintegrator.py for evaluating that intergral within a given volume and give that program as an argument to hdintegrator.py. For an example see e.g. the integrand integrands/N-sphere.py which evaluates the integral for an N-dimensional sphere. Communication between hdintegrator.py and integrands is handled via standard input and output in ASCII format. Each line given to the integrand by hdintegrator.py consists of floating point numbers separated by spaces:

C a0 a1 b0 b1 c0 c1 ...

where C is the number of samples to use for evaluating the integral and a0, a1, b0, etc. represent the minimum and maximum extent of the integration volume respectively. Note that the number of dimensions might change from one line to another, although that is not the case currently. Each line received from the integrand by hdintegrator.py must consist of three floating point numbers separated by spaces in ASCII format:

V E S

where V is the value of the integral, E is an estimate of the absolute integration error and S is the suggested dimension starting from 0 in which to split the integration volume in order to minimize subsequent integration errors.

Support

To seek support or report an issue in HDIntegrator please create a new issue at https://github.com/iljah/hdintegrator/issues

Contributing

To contribute to HDIntegrator please create a new pull request at https://github.com/iljah/hdintegrator/pulls

Owner

Name: Ilja
Login: iljah
Kind: user

Repositories: 3
Profile: https://github.com/iljah

JOSS Publication

High-Dimensional Integrator

Published

December 15, 2017

DOI

10.21105/joss.00437

Volume 2, Issue 20, Page 437

Authors

Ilja Honkonen

Finnish Meteorological Institute

Editor

Daniel S. Katz

CodeMeta (codemeta.json)

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  "@type": "Code",
  "author": [
    {
      "@id": "http://orcid.org/0000-0002-9542-5866",
      "@type": "Person",
      "email": "ilja.honkonen@fmi.fi",
      "name": "Ilja Honkonen",
      "affiliation": "Finnish Meteorological Institute"
    }
  ],
  "identifier": "http://dx.doi.org/",
  "codeRepository": "https://github.com/iljah/hdintegrator",
  "datePublished": "2017-10-04",
  "dateModified": "2017-10-04",
  "dateCreated": "2017-10-04",
  "description": "Program for numerically calculating integrals with arbitrary number of dimensions in parallel using Message Passing Interface",
  "keywords": "software, numerical integration, arbitrary number of dimensions",
  "license": "GPL-3.0",
  "title": "hdintegrator",
  "version": "1.0.1"
}

GitHub Events

Total

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Last synced: 5 months ago

All Time

Total Commits: 103
Total Committers: 3
Avg Commits per committer: 34.333
Development Distribution Score (DDS): 0.068

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Ilja Honkonen	i**n@f**i	96
ilja	i**a@e**n	4
Ilja Honkonen	i**n@n**v	3

Committer Domains (Top 20 + Academic)

nasa.gov: 1 eee.lan: 1 fmi.fi: 1

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Last synced: 4 months ago

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Total issues: 14
Total pull requests: 0
Average time to close issues: 1 day
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 3.5
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
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Issue authors: 0
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Average comments per pull request: 0
Merged pull requests: 0
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marksantcroos (14)

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Packages

Total packages: 1
Total downloads:
- pypi 6 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 3
Total maintainers: 1

pypi.org: hdintegrator

High-Dimensional Integrator, see github.com/iljah/hdintegrator for full version

Homepage: https://github.com/iljah/hdintegrator
Documentation: https://hdintegrator.readthedocs.io/
License: GNU General Public License v3 or later (GPLv3+)
Latest release: 1.0.1
published about 8 years ago

Versions: 3
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 6 Last month

Rankings

Dependent packages count: 10.1%

Dependent repos count: 21.6%

Forks count: 22.7%

Average: 36.3%

Stargazers count: 38.8%

Downloads: 88.4%

Maintainers (1)

iljah

Last synced: 4 months ago

Dependencies

setup.py pypi

mpi4py *
networkx *
scipy *

High-Dimensional Integrator

Science Score: 95.0%

Scientific Fields

Repository

Basic Info

Statistics

Metadata Files

README.md

HDIntegrator

Installation

Usage

Input and output formats

Support

Contributing

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JOSS Publication

High-Dimensional Integrator

Authors

Editor

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CodeMeta (codemeta.json)

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