cppedm

C++ library of EDM tools

https://github.com/sugiharalab/cppedm

Science Score: 52.0%

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CITATION.cff file
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Organization sugiharalab has institutional domain (deepeco.ucsd.edu)
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Low similarity (8.0%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

C++ library of EDM tools

Basic Info

Host: GitHub
Owner: SugiharaLab
License: other
Language: C++
Default Branch: master
Size: 8.4 MB

Statistics

Stars: 19
Watchers: 3
Forks: 7
Open Issues: 0
Releases: 12

Created almost 7 years ago · Last pushed almost 2 years ago

Metadata Files

Readme License Citation

Empirical Dynamic Modeling (EDM)

C++ implementation of EDM tools.

Functionality includes: * Simplex projection (Sugihara and May 1990) * Sequential Locally Weighted Global Linear Maps (S-map) (Sugihara 1994) * Multivariate embeddings (Dixon et. al. 1999) * Convergent cross mapping (Sugihara et. al. 2012) * Multiview embedding (Ye and Sugihara 2016)

A C++17 standard compiler and the LAPACK library are needed to build cppEDM by running make in the src/ directory. This copies libEDM.a into the lib/ directory, where it can be linked to user applications. EDM functions are accessed from the libEDM.a library through the API described in the documentation or in API.h. Example invocations can be found in Test.cc and tests/.

References

Sugihara G. and May R. 1990. Nonlinear forecasting as a way of distinguishing chaos from measurement error in time series. Nature, 344:734–741.

Sugihara G. 1994. Nonlinear forecasting for the classification of natural time series. Philosophical Transactions: Physical Sciences and Engineering, 348 (1688) : 477–495.

Dixon, P. A., M. Milicich, and G. Sugihara, 1999. Episodic fluctuations in larval supply. Science 283:1528–1530.

Sugihara G., May R., Ye H., Hsieh C., Deyle E., Fogarty M., Munch S., 2012. Detecting Causality in Complex Ecosystems. Science 338:496-500.

Ye H., and G. Sugihara, 2016. Information leverage in interconnected ecosystems: Overcoming the curse of dimensionality. Science 353:922–925.

Owner

Name: Sugihara Lab
Login: SugiharaLab
Kind: organization
Email: Sugihara.Lab@gmail.com
Location: UCSD

Website: http://deepeco.ucsd.edu/
Repositories: 4
Profile: https://github.com/SugiharaLab

Quantitative Ecology and Data-Driven Theory

Citation (CITATION.cff)

cff-version: 1.2.0
title: cppEDM
message: >-
  If you use this software please cite. Licensed by the
  University of California for educational, research and
  non-profit purposes.
type: software
authors:
  - given-names: Joseph
    family-names: Park
    email: josephpark@ieee.org
    orcid: 'https://orcid.org/0000-0001-5411-1409'
  - given-names: Cameron
    family-names: Smith
    orcid: 'https://orcid.org/0000-0003-0020-5607'
    email: omid.smith.cameron@gmail.com
  - {}
identifiers:
  - type: url
    value: 'https://github.com/SugiharaLab/cppEDM'
repository-code: 'https://github.com/SugiharaLab/cppEDM'
url: 'https://github.com/SugiharaLab/cppEDM#readme'
abstract: >-
  C++ implementation of EDM tools. UCSD Scripps Institution
  of Oceanography, Sugihara Lab.

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