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twtof

Reader for TwH5 files

https://github.com/jboulanger/twtof

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary

Keywords

biological-data-analysis imaging reader
Last synced: 6 months ago · JSON representation ·

Repository

Reader for TwH5 files

Basic Info
  • Host: GitHub
  • Owner: jboulanger
  • License: gpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage:
  • Size: 838 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
biological-data-analysis imaging reader
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Citation

README.md

Reader for Tofwerk time of flight mass spectroscopy data

This module interprets Tofwerk time of flight mass spectroscopy data HDF5 file as Python objects and numpy arrays.

Installation

bash pip install git+https://github.com/jboulanger/twtof.git

Usage

The jupyter notebook 'Example.ipynb' provides example of use.

An example conda environment is provided to run the notebook. For reference here the command to create the 'tof' environment. bash git clone https://github.com/jboulanger/twtof.git conda env create -f environment.yml conda activate tof pip install git+https://github.com/jboulanger/twtof.git cd twtof

Owner

  • Login: jboulanger
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Boulanger"
  given-names: "Jerome"
  orcid: "https://orcid.org/0000-0003-0237-3743"
title: "twtof"
version: 1.0.0
doi: 10.5281/zenodo.1234
date-released: 2024-03-05
url: "https://github.com/jboulanger/twtof"

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Dependencies

environment.yml pypi
pyproject.toml pypi
  • h5py *
  • numpy *
  • pandas *