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diversification_history_of_clown_tree_frogs_in_neotropical_rainforests

Pirani, R.M., Peloso, P.L.V., Prado, J.R., Polo, E., Knowles, L.L., Ron, S.R., Rodrigues, M.T., et al., (2020). Diversification History of Clown Tree Frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group). Mol Phylog Evol. 150, 1055-7903.

https://github.com/renatapirani/diversification_history_of_clown_tree_frogs_in_neotropical_rainforests

Science Score: 44.0%

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Repository

Pirani, R.M., Peloso, P.L.V., Prado, J.R., Polo, E., Knowles, L.L., Ron, S.R., Rodrigues, M.T., et al., (2020). Diversification History of Clown Tree Frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group). Mol Phylog Evol. 150, 1055-7903.

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Created over 4 years ago · Last pushed over 4 years ago
Metadata Files
Readme Citation

README.md

Biogeography and Species Delimitation is South America

Scripts and input files for the analyses used in the manuscript published at Molecular Phylogenetics and Evolution:

Pirani, R.M., Peloso, P.L.V., Prado, J.R., Polo, E., Knowles, L.L., Ron, S.R., Rodrigues, M.T., et al., (2020). Diversification History of Clown Tree Frogs in Neotropical rainforests (Anura, Hylidae, Dendropsophus leucophyllatus group). Mol Phylog Evol. 150, 1055-7903.

Input files for the analyses presented in the manuscript.

  1. Species tree calibration

. Dleuco_tree.xml: Phylogenetic tree in xml format

  1. Ancetral Range Estimation

. Dleucogeog.data: Geographic data of each species . Dleucotree.newick: Phylogentic tree in newick format

  1. Individuals reconstruction and relationship

. DleucoRaxMLtree.phy.zip: Phylogenetic input file in .phy format with all the loci and missing data for the program RaxML

  1. Species delimitation method

. Test1-7.xml: Species delimitation hypotheses file in .xml format

  1. Individuals reconstruction and relationship

. DleucoIndtree.nex: SVDQuartets Nexus individuals input file

  1. Species reconstruction and relationship

. DleucoSpeciestree.nex: SVDQuartets Nexus species input file

Owner

  • Name: Renata Pirani
  • Login: renatapirani
  • Kind: user
  • Location: Los Angeles
  • Company: University of California Los Angeles

Evolutionary biologist / Herpetologist / Genomics / Women in Science

Citation (CITATION.cff) 

cff-version: 1.2.0
authors: "Pirani, R.M., Peloso, P.L.V., Prado, J.R., Polo, E., Knowles, L.L., Ron, S.R., Rodrigues, M.T., Sturaro, M.J., Werneck, F.P."
title: "Diversification history of clown tree frogs in Neotropical rainforests (Anura, T Hylidae, Dendropsophus leucophyllatus group)"
Journal: Molecular Phylogenetics and Evolution
doi: 10.1016/j.ympev.2020.106877
Available online 06 June 2020
1055-7903/ © 2020 Elsevier Inc. All rights reserved.
url: "https://github.com/renatapirani/Pirani_et_al_2020_Diversification_history_of_clown_tree_frogs_in_Neotropical_rainforests"

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