mapping-pipeline

This repo will combine all the steps of mapping EHR data to the CAPACITY registry in one big docker-compose file

https://github.com/fair-data-for-capacity/mapping-pipeline

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

This repo will combine all the steps of mapping EHR data to the CAPACITY registry in one big docker-compose file

Basic Info
  • Host: GitHub
  • Owner: FAIR-data-for-CAPACITY
  • License: apache-2.0
  • Default Branch: master
  • Size: 40 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Created almost 5 years ago · Last pushed almost 5 years ago
Metadata Files
Readme Changelog Contributing License Code of conduct Citation

README.md

Badges

| fair-software.eu recommendations | | | :-- | :-- | | code repository | github repo badge | | license | github license badge | | howfairis | fair-software badge |

How to use mapping-pipeline

Combines all the steps of uploading ehr to capacity

The project setup is documented in project_setup.md. Feel free to remove this document (and/or the link to this document) if you don't need it.

To run capacity_mapping from GitHub repository, do:

console git clone https://github.com/FAIR-data-for-CAPACITY /capacity-mapping.git cd capacity-mapping docker-compose up

Contributing

If you want to contribute to the development of capacity_mapping, have a look at the contribution guidelines.

Credits

This package was created with Cookiecutter and the NLeSC/python-template.

Owner

  • Name: FAIR-data-for-CAPACITY
  • Login: FAIR-data-for-CAPACITY
  • Kind: organization

Citation (CITATION.cff)

# YAML 1.2
---
cff-version: "1.1.0"
title: "capacity_mapping"
authors:
  -
    family-names: Smits
    given-names: Djura
    orcid: "https://orcid.org/0000-0000-0000-0000"
date-released: 20??-MM-DD
doi: <insert your DOI here>
version: "0.1.0"
repository-code: "https://github.com/FAIR-data-for-CAPACITY /capacity-mapping"
keywords:
  - ehr
  - fhir
message: "If you use this software, please cite it using these metadata."
license: Apache-2.0

GitHub Events

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Dependencies

.github/workflows/cffconvert.yml actions
  • actions/checkout v2 composite
  • citation-file-format/cffconvert-github-action main composite
.github/workflows/markdown-link-check.yml actions
  • actions/checkout main composite
  • gaurav-nelson/github-action-markdown-link-check v1 composite
docker-compose.yml docker
  • hapiproject/hapi latest