osparc-iseg - iSEG Open Source v1.2.2

What's Changed

• Fix: *.prj not *.proj by @mguidon in https://github.com/ITISFoundation/osparc-iseg/pull/129

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.2.1...v1.2.2

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Published by dyollb almost 4 years ago

osparc-iseg - iSEG Open Source v1.2.1

What's Changed

• merge fixes by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/116
• Fix/forgiving hdf5 reader by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/117
• fix macos build with clang 12.0 by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/118
• Property widget by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/119
• Improve "spherize", carve from outside function by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/120
• add github action to build and test by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/122
• Fix mask source, minor changes by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/123
• Fix update progressinfo from thread by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/124
• Kill qt3 by @dyollb in https://github.com/ITISFoundation/osparc-iseg/pull/126
• Extend cli for import by @mguidon in https://github.com/ITISFoundation/osparc-iseg/pull/127
• Add documentation for docker builds by @mguidon in https://github.com/ITISFoundation/osparc-iseg/pull/128

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.2...v1.2.1

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Published by dyollb almost 4 years ago

osparc-iseg - iSEG Open Source v1.2

This update release of iSeg includes several new tools, features and bug fixes, e.g.

• new tools for "cleaning" a segmentation
  • e.g. topological fixes (genus zero, manifold),
  • "supplant tissue", which remove a tissue by evenly distributing it to adjacent tissues
  • split tissue, to find disconnected regions
  • set random colors to selection
• add guide to OLC brush, to show outline of segmentation in different slice
• new/improved import surface/lines feature, allowing to use external CAD/modeling tool to enrich/modify segmentation
• improvements to morphological operators, fix behavior for non-uniform voxel spacing
• import of color images (e.g. Visible Human color image stack) with colors lookup table
• improvements to surface viewer (show disconnected regions, show coarse surface)
• update thirdparty libraries for improved performance (TBB parallelization): ITK 5.0 and VTK 8.2
• various bug fixes, e.g.
  • fixed incorrect slice order in Dicom import
  • ensure transforms attached to image data are preserved, so models are positioned in the original "world coordinate system"

New Contributors

• @cristarta made their first contribution in https://github.com/ITISFoundation/osparc-iseg/pull/73
• @benja263 made their first contribution in https://github.com/ITISFoundation/osparc-iseg/pull/71

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.1...v1.2

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Published by dyollb almost 4 years ago

osparc-iseg - iSEG Open Source v1.1

This update release of iSeg includes several new tools and features, such as

• multi-selection support in tissue explorer
• fast surface visualization of selected tissues/target, for inspection
• improved interpolation
• improvements and fixes to OLC tool
• performance improvements
• support for color images, e.g. cryosections
• bug fixes (Merge Projects, Image Transform editor, radius units in OLC tool, ..)

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.0...v1.1

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Published by dyollb almost 4 years ago

osparc-iseg - iSEG Open Source v1.0

Description The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data. iSEG includes a variety of semi-automatic segmentation methods. The key strengths of iSEG are a) a powerful set of tools for manual segmentation (correction), b) support for massive image sizes, c) suport for segmenting complex models with a large number of tissues. iSEG features a plugin mechanism, which allows users to easily extend the application with custom widgets. The development of iSEG has been driven by the Virtual Population project at the IT'IS Foundation, due to a lack of alternatives amongst open source and commercial tools.

Installation instructions 1. Download the zipped binaries 2. Extract the zip file to a desired location 3. Execute iSEG by executing iSeg.exe file

Release notes - Initial open sourcing of iSEG source code

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Published by dyollb almost 4 years ago