smfretscripts
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 5 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: liu-kan
- License: other
- Language: JavaScript
- Default Branch: main
- Size: 2.35 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
smFRETscripts
Overview
- burstSearchBin.r is a R script help you group smFRET bin data by burst.
fretFit contains matlab/octave scripts to analyze smFRET data.
SMFRET data was analyzed by using the expectation-maximization (EM) algorithm for fitting multi-Gaussian mixture models. First, the program makes a hypothesis about the number of different components that make up the observed smFRET data and then it calculates the likelihood for the corresponding parameters, and finally the program adjusts the parameters to maximize the likelihood. For evaluating the number of Gaussian components, we introduced Bayesian information criterion (BIC) and Akaike information criterion (AIC) terms, in addition to an overall correlation coefficient, R2. The errors associated with Gaussian species were obtained from triplicate experiments. A bootstrap resampling method was also used to estimate the errors, which are generally smaller (<1%).
License and Copyrights
If you feel this software help your research, you can cite this work as "Kan Liu. (2015-2022). liu-kan/smFRETscripts. Zenodo. https:/doi.org/10.5281/zenodo.6557345"
Owner
- Name: Kan Liu
- Login: liu-kan
- Kind: user
- Company: WBG, CAS
- Repositories: 3
- Profile: https://github.com/liu-kan
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you feel this software help your research, you can cite it as below."
authors:
- family-names: Liu
given-names: Kan
orcid: https://orcid.org/0000-0002-5484-5039
title: liu-kan/smFRETscripts: v3.3
version: v3.3
date-released: 2018-12-20