Data

Tools

Indexes

Applications

Experiments

Open Source Science

topics

Material for...

https://github.com/biophys-turin/topics

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: biorxiv.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Material for...

Basic Info
  • Host: GitHub
  • Owner: BioPhys-Turin
  • License: other
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 143 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created about 2 years ago · Last pushed 11 months ago
Metadata Files
Readme License Citation

README.md

Docker Image CI

Exploring the latent space of transcriptomic data with topic modeling

Material for Exploring the latent space of transcriptomic data with topic modeling

See analyses for a detailed description of all the steps to reproduce the analyses

bipartite_network

Environment

The easiest way to run all the notebooks of this repository with all dependencies handled correctly is using Docker.

You can enable jupyter lab with docker-compose bash docker-compose up -d

then point your browser to localhost

Package

A Python package with used functions can be downloaded from https://pypi.org/project/topicpy/ bash pip install topicpy

Owner

  • Name: Biophys Turin group
  • Login: BioPhys-Turin
  • Kind: organization
  • Email: caselle@to.infn.it
  • Location: Italy

GitHub Events

Total
  • Push event: 8
  • Public event: 1
  • Pull request event: 4
  • Create event: 1
Last Year
  • Push event: 8
  • Public event: 1
  • Pull request event: 4
  • Create event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • fvalle1 (1)
Top Labels
Issue Labels
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Dependencies

.github/workflows/docker-image.yml actions
  • actions/checkout v2 composite
Dockerfile docker
  • jupyter/datascience-notebook latest build
docker-compose.yml docker
  • docker.pkg.github.com/fvalle1/topics/topicmodel latest
requirements.txt pypi
  • cairocffi *
  • gobject *
  • gseapy *
  • jupyter *
  • matplotlib *
  • numpy *
  • pandarallel *
  • pandas *
  • regex *
  • scanpy *
  • scipy ==1.10.0
  • seaborn *
  • sklearn *
  • tensorflow *
  • tensorflow_probability *
  • topicpy *
  • watermark *