q2-2021.8_silva132_16s_v3v4_classifier
https://github.com/cckeneally/q2-2021.8_silva132_16s_v3v4_classifier
Science Score: 44.0%
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Low similarity (2.0%) to scientific vocabulary
Last synced: 6 months ago
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Basic Info
- Host: GitHub
- Owner: cckeneally
- License: gpl-3.0
- Language: Shell
- Default Branch: main
- Size: 23.4 KB
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- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Created over 4 years ago
· Last pushed over 1 year ago
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Readme
License
Citation
README.md
Silva13299_16S Pre-trained classifier for V3-V4 region
Compatible with qiime2-2021.10
[Download classifier here](https://drive.google.com/file/d/1ftLKIoxLMfn55NOjyiI55K-DcFxRbi/view?usp=sharing
This is pre-trained classifier for the 16S V3-V4 region (341f - 806r) trained on Silva 132 99% ref sequences and corresponding 7-level taxonomic classifications.
Jiung-Wen Chen has trained V3-V4 classifiers available for qiime2-2019.7 & qiime2-2019.10 (sklearn 0.21.2) from the same silva release, the present classifier was trained with qiime2-2021.10.
Training details in clastrain.sh script
Owner
- Name: Chris Keneally
- Login: cckeneally
- Kind: user
- Location: Adelaide
- Company: The University of Adelaide
- Website: linktr.ee/cckeneally
- Twitter: cckeneally
- Repositories: 2
- Profile: https://github.com/cckeneally
PhD Candidate studying microbial communities and nutrient cycling in hypersaline coastal systems
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this classifier, please cite it as below." authors: - family-names: "Keneally" given-names: "Christopher" orcid: "https://orcid.org/0000-0001-7261-6259" title: "q2-2021.8_silva132_16S_V3V4_classifier" version: 1.0.0 doi: 10.5281/zenodo.7024409 date-released: 2021-10-23 url: "https://github.com/cckeneally/q2-2021.8_silva132_16S_V3V4_classifier"