cvar-seg
Segmentation of S1S2 stimulation protocol measurements.
Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Repository
Segmentation of S1S2 stimulation protocol measurements.
Basic Info
- Host: GitHub
- Owner: KIT-IBT
- License: gpl-3.0
- Language: MATLAB
- Default Branch: main
- Size: 3.45 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
CVAR-Seg
Segmentation of S1S2 stimulation protocol measurements.
CVAR-Seg is an automated pipeline used to evaluate the S1S2 protocol. It uses the complete signal trace of each lead into account and deduces the S1 time, the number of pacing beats as well as number of pacing trains. Finally, the S1 and S2 beats are separated and the local activation times (LATs) are evaluated. Using the LATs the amplitude of the signal is evaluated. Additionally using the electrode locations enables space over time evaluation of CV.
An example using synthetic data is provided. Use "runcvarbench.m" to run the pipeline.
The complete pipeline is described in the publication "CVAR-Seg: An Automated Signal Segmentation Pipeline for Conduction Velocity and Amplitude Restitution", https://doi.org/10.3389/fphys.2021.673047
Owner
- Name: KIT-IBT
- Login: KIT-IBT
- Kind: organization
- Email: publications@ibt.kit.edu
- Repositories: 6
- Profile: https://github.com/KIT-IBT
Institute of Biomedical Engineering (IBT) at Karlsruhe Institute of Technology (KIT)
Citation (CITATION.cff)
cff-version: 1.2.0
title: "CVAR-Seg: An Automated Signal Segmentation Pipeline for Conduction Velocity and Amplitude Restitution"
message: "Please cite this software using the metadata from 'preferred-citation'."
authors:
- given-names: Mark
family-names: Nothstein
affiliation: Karlsruhe Institute of Technology (KIT)
- given-names: Armin
family-names: Luik
affiliation: Städtisches Klinikum Karlsruhe
- given-names: Amir
family-names: Jadidi
affiliation: University Heart Center Freiburg-Bad Krozingen
orcid: https://orcid.org/0000-0002-6402-2845
- given-names: Jorge
family-names: Sánchez
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: https://orcid.org/0000-0002-0824-2691
- given-names: Laura A.
family-names: Unger
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: https://orcid.org/0000-0002-5614-1983
- given-names: Eike M.
family-names: Wülfers
affiliation: University Heart Center Freiburg-Bad Krozingen
orcid: https://orcid.org/0000-0002-8292-6514
- given-names: Olaf
family-names: Dössel
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: https://orcid.org/0000-0003-4551-7970
- given-names: Gunnar
family-names: Seemann
affiliation: University Heart Center Freiburg-Bad Krozingen
orcid: https://orcid.org/0000-0001-7111-7992
- given-names: Claus
family-names: Schmitt
affiliation: Städtisches Klinikum Karlsruhe
- given-names: Axel
family-names: Loewe
email: axel.loewe@kit.edu
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: https://orcid.org/0000-0002-2487-4744
version: all
date-released: 2021-02-27
license: GPL-3.0-or-later
repository-code: https://github.com/KIT-IBT/CVAR-Seg
preferred-citation:
type: article
doi: 10.3389/fphys.2021.673047
title: "CVAR-Seg: An Automated Signal Segmentation Pipeline for Conduction Velocity and Amplitude Restitution"
authors:
- given-names: Mark
family-names: Nothstein
- given-names: Armin
family-names: Luik
- given-names: Amir
family-names: Jadidi
- given-names: Jorge
family-names: Sánchez
- given-names: Laura A.
family-names: Unger
- given-names: Eike M.
family-names: Wülfers
- given-names: Olaf
family-names: Dössel
- given-names: Gunnar
family-names: Seemann
- given-names: Claus
family-names: Schmitt
- given-names: Axel
family-names: Loewe
journal: Frontiers in Physiology
year: 2021
volume: 12
pages: 673047