bcgtree - Version 1.2.1

• Fix issue in GUI if no proteome is provided (#50)

- Perl
Published by iimog about 2 years ago

bcgtree - Version 1.2.0

• Add parameter --genome with translation via prodigal (#15)
• Update and improve documentation (#19, #35, #38, #44)
• Make GUI independent of working directory (#33)
• Switch CI from Travis to GitHub Actions (#45)

- Perl
Published by iimog over 4 years ago

bcgtree - Version 1.1.0

• Breaking: the default aa substitution model for RAxML changed from WAG to AUTO. This has an impact on performance (it is faster to set this parameter to a fixed value). To get the same behaviour as in earlier versions pass --raxml-aa-substitution-model=WAG
• Add parameter --raxml-aa-substitution-model (#29)
• Add HMMs of UBCG (#25)

- Perl
Published by iimog over 7 years ago

bcgtree - Version 1.0.10

• Fix GUI, add scrollbar (#23)
• Add parameter --raxml-args (#22)

- Perl
Published by iimog almost 9 years ago

bcgtree - Version 1.0.9

• Add parameters --min-proteomes and --all-proteomes (#21)

- Perl
Published by iimog about 9 years ago

bcgtree - Version 1.0.8

• Set default bootstraps to 100
• Add description for reproduction of results in paper

- Perl
Published by iimog over 9 years ago

bcgtree - Version 1.0.7

• Add logo to GUI

- Perl
Published by iimog over 9 years ago

bcgtree - Version 1.0.4

• Add parameter to check external programs
• Fix SeqFilter dependencies
• Add swingx and own accordion element for GUI
• Improve GUI design (GridBagLayout)

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.3

• Add log4perl and Getopt::ArgvFile to package (simplify installation)

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.2

• Remove Bioperl dependency
• Add submodules directly (SeqFilter)
• Update documentation

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.1

• Add java GUI

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.6

• Improve layout (avoid errors with large text fields)
• Update jar file

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.5

• Add advanced settings and external programs to GUI
• Add GUI screenshots to README
• Finish GUI layout
• Fix outdir bug (manually entered text was ignored)
• Update documentation in README
• Improve layout of GUI (proteomes panel)

- Perl
Published by iimog almost 10 years ago

bcgtree - Version 1.0.0

Initial release (CLI only)

- Perl
Published by iimog about 10 years ago