Releases | Open Source Science

What's Changed

Adds cythonize() call to extensions in setup.py() by @axiak in https://github.com/scikit-learn-contrib/hdbscan/pull/658
Add new argument for limiting the maximum epsilon by @prodrigues-tdx in https://github.com/scikit-learn-contrib/hdbscan/pull/529

New Contributors

@axiak made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/658
@prodrigues-tdx made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/529

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.39...release-0.8.40

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 1 year ago

What's Changed

Add property setters for class HDBSCAN by @divyegala in https://github.com/scikit-learn-contrib/hdbscan/pull/657

New Contributors

@divyegala made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/657

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.38-2...release-0.8.39

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 1 year ago

hdbscan - release-0.8.38.post2

What's Changed

Fix typo's and avoid internal numpy API in branch detection code. by @JelmerBot in https://github.com/scikit-learn-contrib/hdbscan/pull/654
Build for python 3.12, deprecate python 3.7

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.38-1...release-0.8.38.post2

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 1 year ago

What's Changed

Fix typo's and avoid internal numpy API in branch detection code. by @JelmerBot in https://github.com/scikit-learn-contrib/hdbscan/pull/654
Update build scripts to build wheels for python 3.12

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.38-1...release-0.8.38-2

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Published by lmcinnes over 1 year ago

hdbscan - Fix build process...

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Published by lmcinnes almost 2 years ago

The major change here is the addition of Jelmer Bot's branch detection which allows long flares/branches to be separated into distinct clusters. This is a fairly major advance and should be useful for a number of important use cases.

What's Changed

MAINT: Support NumPy 2 and build Python 3.12 wheels by @seberg in https://github.com/scikit-learn-contrib/hdbscan/pull/644
Remove cython from install requires by @trxcllnt in https://github.com/scikit-learn-contrib/hdbscan/pull/624
Modify description of min_samples by @chenxinye in https://github.com/scikit-learn-contrib/hdbscan/pull/620
Add branch detection functionality by @JelmerBot in https://github.com/scikit-learn-contrib/hdbscan/pull/648
Update hdbscantree.pyx by @lmcinnes in https://github.com/scikit-learn-contrib/hdbscan/pull/649

New Contributors

@seberg made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/644
@trxcllnt made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/624
@JelmerBot made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/648

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.37...release-0.8.38

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 2 years ago

hdbscan - release-0.8.37

Pin numpy<2 for now since this breaks builds.

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Published by lmcinnes almost 2 years ago

hdbscan - release-0.8.36

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.35...release-0.8.36

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 2 years ago

hdbscan - release-0.8.35

What's Changed

Update so it will compile with numpy 2.0 (hopefully)
Typo fix in docs/parameter_selection.rst by @Daniel-Mietchen in https://github.com/scikit-learn-contrib/hdbscan/pull/632
correct typo in variable declaration by @cearlefraym in https://github.com/scikit-learn-contrib/hdbscan/pull/635

New Contributors

@Daniel-Mietchen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/632
@cearlefraym made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/635

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.34-rc1...release-0.8.35

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 2 years ago

hdbscan - 0.8.34-rc1

What's Changed

Update validity.py by @armenbod in https://github.com/scikit-learn-contrib/hdbscan/pull/580
Wheel publish github action by @Rhaedonius in https://github.com/scikit-learn-contrib/hdbscan/pull/604
Build platform dependent wheel files by @gclendenning in https://github.com/scikit-learn-contrib/hdbscan/pull/606
Fixed DeprecationWarning in hdbscan/hdbscan_.py by @gerald-ftk in https://github.com/scikit-learn-contrib/hdbscan/pull/612
Add .readthedocs.yaml to fix failing docs build issue. by @chenxinye in https://github.com/scikit-learn-contrib/hdbscan/pull/619

New Contributors

@armenbod made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/580
@gerald-ftk made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/612
@chenxinye made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/619

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.33...release-0.8.34-rc1

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 2 years ago

hdbscan - Patching for recent Cython issues

Hopefully the last round of patches to work around recent issues introduced by a newer release of Cython

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Published by lmcinnes almost 3 years ago

hdbscan - Minor patch release

Cython 3 introduces a number of issues; prevent using Cython 3 for compilation until we've worked through all the changes required.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 3 years ago

hdbscan - Minor patch release

Resolve recent build issues with full module name resolution

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.30...0.8.31

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 3 years ago

hdbscan - Minor patch release 0.8.30

What's Changed

Changes to support scikit-learn 1.3
Fix typo in docstring by @yoavram in https://github.com/scikit-learn-contrib/hdbscan/pull/573
Set seed for generating noisy data by @gclendenning in https://github.com/scikit-learn-contrib/hdbscan/pull/594

New Contributors

@yoavram made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/573
@gclendenning made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/594

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.29...0.8.30

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 3 years ago

hdbscan - WIndows Wheels

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 3 years ago

hdbscan - Minor patch release 0.8.29

What's Changed

Fix malformed list in docs by @dmlls in https://github.com/scikit-learn-contrib/hdbscan/pull/535
Incorrect initialization in BallTreeBoruvka dualtreetraversal by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/508
hdbscan: add support to other types of input integers by @jcfaracco in https://github.com/scikit-learn-contrib/hdbscan/pull/540
Add parameter to DBCV which toggles the usage of mutual reachability distances by @luis261 in https://github.com/scikit-learn-contrib/hdbscan/pull/552
Fixed: validity index no longer returning nan by @tadorfer in https://github.com/scikit-learn-contrib/hdbscan/pull/558
Use a positional argument for the cachedir/location by @lmcinnes in https://github.com/scikit-learn-contrib/hdbscan/pull/563

New Contributors

@dmlls made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/535
@jcfaracco made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/540
@luis261 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/552
@tadorfer made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/558
@lmcinnes made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/563

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.28...0.8.29

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 3 years ago

hdbscan - Push Wheels to PyPI

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 4 years ago

hdbscan - Resync tags

Resync release tags with PyPI

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 4 years ago

hdbscan - 0.8.27

What's Changed

Added axis control on colourbars by @tomcharnock in https://github.com/scikit-learn-contrib/hdbscan/pull/365
Fixing typos by @cassmarcussen in https://github.com/scikit-learn-contrib/hdbscan/pull/366
Predict score by @Rhaedonius in https://github.com/scikit-learn-contrib/hdbscan/pull/368
fix issue 370 by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/371
fix the core distance computation can only use 4 cores. by @GorvinChen in https://github.com/scikit-learn-contrib/hdbscan/pull/377
Issue 370 by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/385
Fixed line widths for single linkage dendrograms with duplicate lambda_val by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/391
Module for flat clustering by @sabarish-akridata in https://github.com/scikit-learn-contrib/hdbscan/pull/398
Improved union-find data structure implementation by @kylehofmann in https://github.com/scikit-learn-contrib/hdbscan/pull/412
fixes #370 -- epsilon search would crash when root node in leaf list by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/400
let root children size==1 to join root node in allow_single based on 1/eps by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/418
fix issue-436 unused deprecated joblib option by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/438
Fix build errors by @gansanay in https://github.com/scikit-learn-contrib/hdbscan/pull/449
update build by @gansanay in https://github.com/scikit-learn-contrib/hdbscan/pull/450
Fix mismatching clusters probabilities in softclustering by @narjes23 in https://github.com/scikit-learn-contrib/hdbscan/pull/454
Fixing typos in "Don't be wrong!" section by @hovikgas in https://github.com/scikit-learn-contrib/hdbscan/pull/455
Update pyproject.toml to use oldest-supported-numpy by @stradigi-mario-bruno in https://github.com/scikit-learn-contrib/hdbscan/pull/458
Fix numpy 1.20 deprecation warnings by @rmcgibbo in https://github.com/scikit-learn-contrib/hdbscan/pull/468
maxclustersize parameter by @Rocketknight1 in https://github.com/scikit-learn-contrib/hdbscan/pull/410
Fix typos by @julienschuermans in https://github.com/scikit-learn-contrib/hdbscan/pull/489
handle non-finite valued vectors by @jc-healy in https://github.com/scikit-learn-contrib/hdbscan/pull/497
Fixed the bug that joblib uses memory mapping when data size is too large by @ginward in https://github.com/scikit-learn-contrib/hdbscan/pull/495
Fix ZeroDivisionError: float division error when computing perclusterscores by @Dicksonchin93 in https://github.com/scikit-learn-contrib/hdbscan/pull/502
Update requirements.txt by @Ben-Epstein in https://github.com/scikit-learn-contrib/hdbscan/pull/503
Fixed off by one errors in min_samples for multiple algorithms by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/394
Modified Prims to generate MST by @pberba in https://github.com/scikit-learn-contrib/hdbscan/pull/315
Remove usage of six by @rahulporuri in https://github.com/scikit-learn-contrib/hdbscan/pull/516
dbscan cluster extraction by @jc-healy in https://github.com/scikit-learn-contrib/hdbscan/pull/519

New Contributors

@tomcharnock made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/365
@cassmarcussen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/366
@Rhaedonius made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/368
@neontty made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/371
@GorvinChen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/377
@GregDemand made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/391
@sabarish-akridata made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/398
@kylehofmann made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/412
@gansanay made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/449
@narjes23 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/454
@hovikgas made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/455
@stradigi-mario-bruno made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/458
@rmcgibbo made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/468
@Rocketknight1 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/410
@julienschuermans made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/489
@jc-healy made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/497
@ginward made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/495
@Dicksonchin93 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/502
@Ben-Epstein made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/503
@pberba made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/315
@rahulporuri made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/516

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.26...0.8.27

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 4 years ago

hdbscan - 0.8.26

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Published by lmcinnes about 6 years ago

hdbscan - 0.8.24

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 6 years ago

hdbscan - Minor patch release

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 6 years ago

hdbscan - Minor patch release

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 7 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 7 years ago

hdbscan - More packaging fixes

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Published by lmcinnes over 7 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 7 years ago

hdbscan - More easily pip installable

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 7 years ago

hdbscan -

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Published by lmcinnes almost 8 years ago

hdbscan - Python 3.7 compatibility

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Published by lmcinnes almost 8 years ago

hdbscan - Binary wheels release

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 8 years ago

hdbscan - Bug fixes

A variety of minor bug fixes.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 8 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 8 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 9 years ago

hdbscan - JOSS Paper version

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Published by lmcinnes about 9 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 9 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 9 years ago

hdbscan -

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 9 years ago

hdbscan - Bugfixes for DBCV index

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 9 years ago

hdbscan - Validity Index

We introduce the density based clustering validity index from Density Based Clustering Validation by Moulavi, Jaskowiak, Campello, Zimek and Sander, as well as some minor bug fixes, and the option to match the reference implementation of HDBSCAN*

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes over 9 years ago

hdbscan - Patch release

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Published by lmcinnes over 9 years ago

hdbscan - Fix for issue #62

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Published by lmcinnes over 9 years ago

hdbscan - Minor fixes

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 10 years ago

hdbscan - Cluster strengths

Support for cluster strengths and general bug fixes.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes almost 10 years ago

hdbscan - Plotting refresh

A visual refresh of the plotting routines, along with a series of bug fixes for various corner cases.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by lmcinnes about 10 years ago

hdbscan - Working on Linux Again

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Published by lmcinnes about 10 years ago

hdbscan - Bugfix labelling

A very minor performance regression to get this fixed, but it eliminates segfaults on Linux, so is necessary.