generalbfxpkg
An R package for data manipulation of general bioinformatics and clinical data.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Keywords
r
r-package
Last synced: 6 months ago
·
JSON representation
·
Repository
An R package for data manipulation of general bioinformatics and clinical data.
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
r
r-package
Created about 2 years ago
· Last pushed about 2 years ago
Metadata Files
Readme
Changelog
License
Citation
README.Rmd
---
title: "generalbfxpkg v0.0.0"
output: github_document
date: "2023-06-02"
author: "Artemio Sison III"
---
# bfxpkg
[](https://github.com/miosisoniii/generalbfxpkg/actions/workflows/R-CMD-check.yaml)
The goal of `generalbfxpkg` is to streamline and optimize existing my Bioinformatics and clinical data workflows and establish consistency across code-writing for future teams I am working with.
## Installation
You can install the development version of bfxpkg from [GitHub](https://github.com/) with:
```{r installation requirements}
## install devtools() package if you don't have it already
# install.packages("devtools")
## or you can install with remotes()
# install.packages("remotes")
```
This is a private repository, so you will need your **Personal Access Token**, or PAT.
`TOKEN`
```{r installation with personal access token}
## install this development version from Github (we don't want bfxpkg on CRAN)
# devtools::install_github("miosisoniii/generalbfxpkg",
# auth_token = "TOKEN")
# remotes::install_github("miosisoniii/generalbfxpkg",
# auth_token = "TOKEN")
```
Here is how is how I created a PAT for you to use when you install:
- Click on your profile picture in the top-right corner of the GitHub page.
- Click on *Developer Settings* at the bottom of the left sidebar
- Click on *Personal Access Tokens* in the left sidebar
- Click on "Generate New token" at the bottom of the page
- After generating the token, **Copy** it, and then paste the token into the `auth_token = ` arg in the call to `install_github()` with `devtools` or `remotes`.
Owner
- Name: Mio Sison III
- Login: miosisoniii
- Kind: user
- Location: Denver, CO
- Company: @Inovio-Pharmaceutical
- Website: www.photomaki.xyz
- Repositories: 18
- Profile: https://github.com/miosisoniii
Scientist 💉 Wedding Photographer 📸
Citation (CITATION.cff)
# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.4.1
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
cff-version: 1.2.0
message: 'To cite package "bfxpkg" in publications use:'
type: software
title: 'generalbfxpkg: General Bioinformatics Data Manipulation'
version: 0.0.0.9000
abstract: A package designed for manipulation of general clinical and bioinformatics data.
authors:
- family-names: Sison III
given-names: Artemio
email: miosisoniii@gmail.com
repository-code: https://github.com/miosisoniii/generalbfxpkg
url: https://github.com/miosisoniii/generalbfxpkg
contact:
- family-names: Sison III
given-names: Artemio
email: miosisoniii@gmail.com
references:
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
year: '2023'
version: '>= 3.0.0'
GitHub Events
Total
Last Year
Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- anonymizer >= 0.2.2 imports
- broom * imports
- cli * imports
- data.table * imports
- dplyr * imports
- exactRankTests * imports
- glue * imports
- openxlsx * imports
- pbapply * imports
- raster * imports
- readr * imports
- rlang * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- usethis * imports
- utils * imports
- CytoML * suggests
- XLConnect * suggests
- flowWorkspace * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests