scikit-surgerybard

BARD: The Basic Augmented Reality Demo, used at MedICSS summer school.

https://github.com/scikit-surgery/scikit-surgerybard

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 2 DOI reference(s) in README
○
Academic publication links
✓
Committers with academic emails
5 of 8 committers (62.5%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.9%) to scientific vocabulary

Keywords

aruco augmented-reality-applications opencv-python scikit-surgery scikit-surgerybard vtk-applications

Keywords from Contributors

ucl surgery augmented-reality opencv vtk ndi

Last synced: 4 months ago · JSON representation ·

Repository

BARD: The Basic Augmented Reality Demo, used at MedICSS summer school.

Basic Info

Host: GitHub
Owner: SciKit-Surgery
License: other
Language: Python
Default Branch: master
Homepage: https://scikit-surgerybard.readthedocs.io/
Size: 72.2 MB

Statistics

Stars: 8
Watchers: 3
Forks: 3
Open Issues: 16
Releases: 5

Topics

aruco augmented-reality-applications opencv-python scikit-surgery scikit-surgerybard vtk-applications

Created over 5 years ago · Last pushed 11 months ago

Metadata Files

Readme Contributing License Citation

README.rst

Basic Augmented Reality Demo.
===============================

.. image:: https://github.com/SciKit-Surgery/scikit-surgerybard/raw/master/sksbard_logo.png
   :height: 128px
   :width: 128px
   :target: https://github.com/SciKit-Surgery/scikit-surgerybard
   :alt: Logo

|

.. image:: https://github.com/SciKit-Surgery/scikit-surgerybard/workflows/.github/workflows/ci.yml/badge.svg 
   :target: https://github.com/SciKit-Surgery/scikit-surgerybard/actions
   :alt: Travis CI test status

.. image:: https://coveralls.io/repos/github/SciKit-Surgery/scikit-surgerybard/badge.svg?branch=master&service=github
    :target: https://coveralls.io/github/SciKit-Surgery/scikit-surgerybard?branch=master
    :alt: Test coverage

.. image:: https://readthedocs.org/projects/scikit-surgerybard/badge/?version=latest
    :target: http://scikit-surgerybard.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. image:: https://img.shields.io/badge/Video-BARD-blueviolet
   :target: https://youtu.be/frviS--x5y4
   :alt: SciKit-SurgeryBARD Demonstration on YouTube

.. image:: https://img.shields.io/badge/Cite-SciKit--Surgery-informational
   :target: https://doi.org/10.1007/s11548-020-02180-5
   :alt: The SciKit-Surgery paper

.. image:: https://img.shields.io/twitter/follow/scikit_surgery?style=social
   :target: https://twitter.com/scikit_surgery?ref_src=twsrc%5Etfw
   :alt: Follow scikit_surgery on twitter


Author(s): Miguel Xochicale, Thomas Dowrick, Stephen Thompson and Matt Clarkson;
Contributor(s): Mian Ahmad.

Basic Augmented Reality Demo (BARD) is part of the `SciKit-Surgery`_ software project, developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_, part of `University College London (UCL)`_.

The BARD is tested on Python 3.9, 3.10 and 3.11 and may support other Python versions.


Developing
----------


Encountering Problems?
^^^^^^^^^^^^^^^^^^^^^^
Please get in touch or raise an `issue`_.


Contributing
^^^^^^^^^^^^

Please see the `contributing guidelines`_.


Useful links
^^^^^^^^^^^^

* `Source code repository`_
* `Documentation`_


Licensing and copyright
-----------------------

Copyright 2019 University College London.
Basic Augmented Reality Demo. is released under the BSD-3 license. Please see the `license file`_ for details.


Acknowledgements
----------------

Supported by `Wellcome`_ and `EPSRC`_.


.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://github.com/SciKit-Surgery/scikit-surgerybard
.. _`Documentation`: https://scikit-surgerybard.readthedocs.io
.. _`SciKit-Surgery`: https://github.com/SciKit-Surgery/scikit-surgery/
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://github.com/SciKit-Surgery/scikit-surgerybard/blob/master/CONTRIBUTING.rst
.. _`license file`: https://github.com/SciKit-Surgery/scikit-surgerybard/blob/master/LICENSE
.. _`issue`: https://github.com/SciKit-Surgery/scikit-surgerybard/issues/new

Owner

Name: SciKit-Surgery
Login: SciKit-Surgery
Kind: organization
Email: s.thompson@ucl.ac.uk

Website: https://scikit-surgery.github.io/scikit-surgery/
Twitter: scikit_surgery
Repositories: 28
Profile: https://github.com/SciKit-Surgery

Compact Libraries for Surgical Navigation

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this in software please cite it as below."
authors:
- family-names: "Thompson"
  given-names: "Stephen"
  orcid: "https://orcid.org/0000-0001-7286-1326"
- family-names: "Dowrick"
  given-names: "Thomas"
  orcid: "https://orcid.org/0000-0002-2712-4447"
- family-names: "Ahmad"
  given-names: "Mian"
  orcid: "https://orcid.org/0000-0002-4706-4146"
- family-names: "Clarkson"
  given-names: "Matthew"
  orcid: "https://orcid.org/0000-0002-5565-1252"
title: "SciKit-SurgeryBard"
url: "https://github.com/SciKit-Surgery/scikit-surgerybard"
doi: "10.5281/zenodo.5024673"
preferred-citation:
  type: article
  authors:
  - family-names: "Thompson"
    given-names: "Stephen"
    orcid: "https://orcid.org/0000-0001-7286-1326"
  - family-names: "Dowrick"
    given-names: "Thomas"
    orcid: "https://orcid.org/0000-0002-2712-4447"
  - family-names: "Ahmad"
    given-names: "Mian"
    orcid: "https://orcid.org/0000-0002-4706-4146"
  - family-names: "Xiao"
    given-names: "Guofang"
  - family-names: "Koo"
    given-names: "Bongjin"
    orcid: "https://orcid.org/0000-0002-3611-4988"
  - family-names: "Bonmati"
    given-names: "Ester"
    orcid: "https://orcid.org/0000-0001-9217-5438"
  - family-names: "Kahl"
    given-names: "Kim"
  - family-names: "Clarkson"
    given-names: "Matthew"
    orcid: "https://orcid.org/0000-0002-5565-1252"
  doi: 10.1007/s11548-020-02180-5
  journal: "International journal of computer assisted radiology and surgery"
  start: 1075
  end: 1084
  title: "SciKit-Surgery: Compact Libraries for Surgical Navigation"
  volume: 15
  issue: 7
  year: 2020

GitHub Events

Total

Issues event: 5
Watch event: 1
Issue comment event: 4
Push event: 9
Pull request event: 1
Pull request review event: 1
Create event: 4

Last Year

Issues event: 5
Watch event: 1
Issue comment event: 4
Push event: 9
Pull request event: 1
Pull request review event: 1
Create event: 4

Committers

Last synced: 7 months ago

All Time

Total Commits: 444
Total Committers: 8
Avg Commits per committer: 55.5
Development Distribution Score (DDS): 0.437

Past Year

Commits: 15
Committers: 1
Avg Commits per committer: 15.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Stephen Thompson	s**n@u**k	250
Mian Asbat ahmad	m**d@e**k	96
Matt Clarkson	m**n@u**k	54
Miguel Xochicale	m**e@u**k	18
enkaoua	5****a	9
Thomas Dowrick	t**k@g**m	8
Mian Ahmad	m**d@u**k	8
Mian Asbat Ahmad	m**t@g**m	1

Committer Domains (Top 20 + Academic)

ucl.ac.uk: 4 eduroam-int-dhcp-97-228-159.ucl.ac.uk: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 81
Total pull requests: 30
Average time to close issues: about 2 months
Average time to close pull requests: about 11 hours
Total issue authors: 9
Total pull request authors: 5
Average comments per issue: 2.11
Average comments per pull request: 0.13
Merged pull requests: 29
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 3
Pull requests: 2
Average time to close issues: 21 days
Average time to close pull requests: about 2 hours
Issue authors: 2
Pull request authors: 1
Average comments per issue: 0.33
Average comments per pull request: 2.0
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

thompson318 (64)
MattClarkson (5)
mxochicale (3)
rohang1411 (2)
swishswish123 (2)
tdowrick (2)
enkaoua (1)
rohanscryenx (1)
Aliflar (1)

Pull Request Authors

thompson318 (22)
MattClarkson (3)
mxochicale (3)
enkaoua (2)
tdowrick (1)

Top Labels

Issue Labels

gitlab merge request (8) p3-low (1) enhancement (1) p0-critical (1) p2-medium (1) p1-high (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 59 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 14
Total maintainers: 2

pypi.org: scikit-surgerybard

scikit-surgerybard is a Basic Augmented Reality Demo (BARD)based on scikit-surgery (SNAPPY)

Homepage: https://github.com/SciKit-Surgery/scikit-surgerybard
Documentation: https://scikit-surgerybard.readthedocs.io/
License: BSD-3 license
Latest release: 1.1.2
published 11 months ago

Versions: 14
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 59 Last month

Rankings

Dependent packages count: 10.1%

Average: 19.7%

Stargazers count: 20.4%

Dependent repos count: 21.6%

Forks count: 22.7%

Downloads: 23.8%

Maintainers (2)

MattClarkson weiss_ucl

Last synced: 5 months ago

Dependencies

requirements-dev.txt pypi

coverage * development
coveralls * development
mock * development
parameterized * development
pyfakefs * development
pyinstaller * development
pylint <2.14 development
pytest * development
sphinx * development
sphinx_rtd_theme * development
tox * development
versioneer * development
vtk <=9.0.1 development

requirements.txt pypi

PySide2 <5.15.0
glob2 *
numpy *
opencv-contrib-python-headless *
scikit-surgeryarucotracker >=0.2.5
scikit-surgerycalibration <=0.1.11
scikit-surgerycore >=0.6.8
scikit-surgeryutils <1.2
scikit-surgeryvtk *

setup.py pypi

PySide2 <5.15.0
glob2 *
numpy *
opencv-contrib-python-headless *
scikit-surgeryarucotracker >=0.2.5
scikit-surgerycalibration <=0.1.11
scikit-surgerycore >=0.6.8
scikit-surgeryutils <1.2
scikit-surgeryvtk *

.github/workflows/ci.yml actions

actions/checkout v3 composite
actions/checkout master composite
actions/setup-python v4 composite
pypa/gh-action-pypi-publish release/v1 composite

requirements-docs.txt pypi

docutils *
six *
sphinx *
sphinx_rtd_theme *