rica
Rica (Reports for ICA) provides an app to visualize ICA components and perform manual classification in an interactive way
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.6%) to scientific vocabulary
Keywords
Repository
Rica (Reports for ICA) provides an app to visualize ICA components and perform manual classification in an interactive way
Basic Info
- Host: GitHub
- Owner: ME-ICA
- License: lgpl-2.1
- Language: JavaScript
- Default Branch: master
- Homepage: https://rica-fmri.netlify.app
- Size: 2.3 MB
Statistics
- Stars: 7
- Watchers: 2
- Forks: 2
- Open Issues: 15
- Releases: 21
Topics
Metadata Files
README.md
Rica
As part of the ME-ICA pipeline, Rica (Reports for ICA) provides a reporting tool for ICA decompositions performed with tedana and aroma.
Pronunciation: [ˈrika]. For an audio recording on how to pronounce Rica see here.
About
Rica originally came out as an alternative to the reports provided by tedana, with the aim of making manual classification of ICA components possible. At the same time, the tool aspires to be of value for ICA decompositions made with tools other than tedana. Rica assumes you're working with files that mimic the outputs of tedana.
How to use Rica
Even if Rica is designed to be simple to use, you might want to see how you can use the app by watching this tutorial video.
Rica also supports keyboard shortcuts on the ICA components page. You can use the following shortcuts:
a: Accept component.r: Reject component.i: Ignore component.left arrow: Go to previous component.right arrow: Go to next component.
Using Rica online
Just head over to https://rica-fmri.netlify.app and have fun!
Using Rica locally
Installation
Rica can be installed by cloning this repository and executing the following command in the cloned repository:
npm install
In order to run the tool locally, two options exist:
1. Using a localhost
By executing the npm start command in the cloned repository, Rica will open in a new browser tab at http://localhost:3000 and you will be able to use the tool.
2. Compiling the tool
You could also compile the project so that you can use the tool just by opening an HTML file. For that, it is necessary to execute the following commands in the cloned repository.
bash
npm run build
npx gulp
mv build/index.html build/rica.html
open build/rica.html
Pro tip: when you open rica.html for the first time, BOOKMARK IT 😉
Getting involved
Want to learn more about our plans for developing Rica? Have a question, comment, or suggestion? Open or comment on one of our issues!
Owner
- Name: ME-ICA
- Login: ME-ICA
- Kind: organization
- Website: https://me-ica.github.io
- Repositories: 15
- Profile: https://github.com/ME-ICA
Python-based tools for analyzing multi-echo fMRI data
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Uruñuela
given-names: Eneko
orcid: https://orcid.org/0000-0001-6849-9088
title: "Rica"
version: v1.0.17
doi: 10.5281/zenodo.5788350
date-released: 2021-12-17
url: "https://github.com/ME-ICA/rica"
GitHub Events
Total
- Watch event: 1
- Fork event: 1
Last Year
- Watch event: 1
- Fork event: 1
Dependencies
- @tailwindcss/jit ^0.1.10 development
- autoprefixer ^10.4.1 development
- concurrently ^6.5.1 development
- gulp ^3.9.1 development
- gulp-inline-source ^3.2.0 development
- gulp-replace ^1.1.3 development
- postcss ^8.4.5 development
- tailwindcss ^2.2.19 development
- @blueprintjs/core ^3.53.0
- @fortawesome/fontawesome-svg-core ^1.2.36
- @fortawesome/free-brands-svg-icons ^5.15.4
- @fortawesome/free-regular-svg-icons ^5.15.4
- @fortawesome/free-solid-svg-icons ^5.15.4
- @fortawesome/react-fontawesome ^0.1.15
- @reach/rect ^0.16.0
- @reach/tabs ^0.16.4
- chart.js 3.5.0
- chartjs-plugin-datalabels 2.0.0
- chartjs-plugin-zoom 1.1.1
- postcss-cli ^9.1.0
- react ^17.0.2
- react-chartjs-2 3.0.4
- react-dom ^17.0.2
- react-hotkeys ^2.0.0
- react-icons ^4.2.0
- react-papaparse ^3.17.2
- react-scripts ^5.0.0
- recharts ^2.1.2
- styled-components ^5.3.1
- web-vitals ^1.1.2