QuartetNetworkGoodnessFit - v1.0.0

QuartetNetworkGoodnessFit v1.0.0

Diff since v0.5.1

Breaking change

This release brings compatibility with PhyloNetworks v1.0.0, a major breaking change which split PhyloNetworks v0.17 into several smaller packages, including SNaQ. QGoF now depends on the lighter PhyloNetworks (v1) and on SNaQ, and follows their new API: see the documentation.

Merged pull requests: - links (cecileane and crsl4) updated to JuliaPhylo (#29) (@cecileane) - v1.0.0: compat update to PhyloNetworks v1 and SNaQ v1 (#30) (@cecileane)

- Julia
Published by github-actions[bot] 8 months ago

QuartetNetworkGoodnessFit - v0.5.1

QuartetNetworkGoodnessFit v0.5.1

Diff since v0.5.0

Merged pull requests: - CompatHelper: bump compat for NLopt to 1, (keep existing compat) (#26) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) (#27) (@github-actions[bot]) - updated references (#28) (@cecileane)

- Julia
Published by github-actions[bot] almost 2 years ago

QuartetNetworkGoodnessFit - v0.5.0

QuartetNetworkGoodnessFit v0.5.0

• new feature: calculation of expected concordance factors on networks of any level, and under the coalescent model with possible correlated inheritance.
• requires PhyloNetworks v0.16 for accessors (e.g. getchild, getparent).

Diff since v0.4.0

Merged pull requests: - recursive calculation of quartet CFs for general networks (#22) (@cecileane) - bug fix in expected qCF calculation (#23) (@cecileane) - bump compat for PhyloNetworks to 0.16, drop earlier (#25) (@cecileane)

- Julia
Published by github-actions[bot] almost 3 years ago

QuartetNetworkGoodnessFit - v0.4.0

QuartetNetworkGoodnessFit v0.4.0

Diff since v0.3.4

Merged pull requests: - switch simulator: use PhyloCoalSimulations instead of HybridLambda (#21) (@cecileane)

- Julia
Published by github-actions[bot] over 3 years ago

QuartetNetworkGoodnessFit - v0.3.4

QuartetNetworkGoodnessFit v0.3.4

Diff since v0.3.3

Merged pull requests: - CompatHelper: bump compat for StatsFuns to 1, (keep existing compat) (#19) (@github-actions[bot]) - CompatHelper: bump compat for PhyloNetworks to 0.15, (keep existing compat) (#20) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 3 years ago

QuartetNetworkGoodnessFit - v0.3.3

QuartetNetworkGoodnessFit v0.3.3

Diff since v0.3.2

compat: julia v1.7, CSV 0.10, SpecialFunctions 2

Merged pull requests: - CompatHelper: bump compat for SpecialFunctions to 2, (keep existing compat) (#16) (@github-actions[bot]) - CompatHelper: bump compat for CSV to 0.10, (keep existing compat) (#17) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 4 years ago

QuartetNetworkGoodnessFit - v0.3.2

QuartetNetworkGoodnessFit v0.3.2

Diff since v0.3.1

Merged pull requests: - CompatHelper: bump compat for CSV to 0.9, (keep existing compat) (#14) (@github-actions[bot]) - fix gh action build for documentation (#15) (@cecileane)

- Julia
Published by github-actions[bot] over 4 years ago

QuartetNetworkGoodnessFit - v0.3.1

QuartetNetworkGoodnessFit v0.3.1

Diff since v0.3.0

support for: julia 1.6, PhyloNetworks 0.14, DataFrames 1.0

Merged pull requests: - CompatHelper: bump compat for "PhyloNetworks" to "0.13" (#12) (@github-actions[bot]) - for v0.3.1: support for julia v1.6, DataFrames v1.0, etc. (#13) (@github-actions[bot])

- Julia
Published by github-actions[bot] almost 5 years ago

QuartetNetworkGoodnessFit - v0.3.0

QuartetNetworkGoodnessFit v0.3.0

Diff since v0.2.1

• compatible with julia v1.5
• based on simulator hybrid-Lambda v0.6.3-beta (warning if the simulated z's are far from 0)
• bug fix if branch lengths are optimized: non-lenient tolerance and expected CFs updated kept in sync
• better ultrametrization of a network with missing branch lengths, including bug fix when both partner edges lack a length

Merged pull requests: - ultrametrize when both partners lack a length; julia 1.5 (#7) (@cecileane) - CompatHelper: bump compat for "DataFrames" to "0.22" (#8) (@github-actions[bot]) - CompatHelper: bump compat for "CSV" to "0.8" (#9) (@github-actions[bot]) - CompatHelper: bump compat for "SpecialFunctions" to "1.0" (#10) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 5 years ago

QuartetNetworkGoodnessFit - v0.2.1

QuartetNetworkGoodnessFit v0.2.1

Diff since v0.2.0

Merged pull requests: - CompatHelper: bump compat for "DataFrames" to "0.21" (#4) (@github-actions[bot]) - CompatHelper: bump compat for "NLopt" to "0.6" (#5) (@github-actions[bot]) - CompatHelper: bump compat for "CSV" to "0.7" (#6) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 5 years ago

QuartetNetworkGoodnessFit - v0.2.0

QuartetNetworkGoodnessFit v0.2.0

Diff since v0.1.0

new features: - simulation-based correction for dependence - hybrid-lambda dependency

bug fix: ultrametrize network along major tree, for hybrid-lambda simulator

- Julia
Published by github-actions[bot] almost 6 years ago

QuartetNetworkGoodnessFit - v0.1.0

v0.1.0 (2019-09-27)

Diff since 2b9a559f8f9ad118d06661dfa7cf5ae36129544d

- Julia
Published by julia-tagbot[bot] over 6 years ago