pip-tools Template

This is a minimal Python 3.12 application that uses pip-tools for packaging and dependency management. It also provides pre-commit hooks (for for ruff and mypy) and automated tests using pytest and GitHub Actions. Pre-commit hooks are automatically kept updated with a dedicated GitHub Action, this can be removed and replace with pre-commit.ci if using an public repo. It was developed by the Imperial College Research Computing Service.

pip-tools is chosen as a lightweight dependency manager that adheres to the latest standards using pyproject.toml.

Usage

To use this repository as a template for your own application:

1. Click the green "Use this template" button above
2. Name and create your repository
3. Clone your new repository and make it your working directory
4. Replace instances of myproject with your own application name. Edit:
   • pyproject.toml (also change the list of authors here)
   • tests/test_myproject.py
   • Rename myproject directory
5. Create and activate a Virtual Environment:

bash python -m venv .venv source .venv/bin/activate # with Powershell on Windows: `.venv\Scripts\Activate.ps1`

1. Install development requirements:

bash pip install -r dev-requirements.txt

1. Install the git hooks:

bash pre-commit install

1. Run the main app:

bash python -m myproject

1. Run the tests:

bash pytest

Updating Dependencies

To add or remove dependencies:

1. Edit the dependencies variables in the pyproject.toml file (aim to keep develpment tools separate from the project requirements).
2. Update the requirements files:
   • pip-compile for requirements.txt - the project requirements.
   • pip-compile --extra dev -o dev-requirements.txt for dev-requirements.txt - the development requirements.
3. Sync the files with your installation (install packages):
   • pip-sync dev-requirements.txt requirements.txt

To upgrade pinned versions, use the --upgrade flag with pip-compile.

Versions can be restricted from updating within the pyproject.toml using standard python package version specifiers, i.e. "black<23" or "pip-tools!=6.12.2"

Customising

All configuration can be customised to your preferences. The key places to make changes for this are:

• The pyproject.toml file, where you can edit:
  • The build system (change from setuptools to other packaging tools like Hatch or flit).
  • The python version.
  • The project dependencies. Extra optional dependencies can be added by adding another list under [project.optional-dependencies] (i.e. doc = ["mkdocs"]).
  • The mypy and pytest configurations.
• The .pre-commit-config.yaml for pre-commit settings.
• The .github directory for all the CI configuration.
  • This repo uses pre-commit.ci to update pre-commit package versions and automatically merges those PRs with the auto-merge.yml workflow.
  • Note that pre-commit.ci is an external service and free for open source repos. For private repos uncomment the commented portion of the pre-commit_autoupdate.yml workflow.

Publishing

The GitHub workflow includes an action to publish on release. To run this action, uncomment the commented portion of publish.yml, and modify the steps for the desired behaviour (publishing a Docker image, publishing to PyPI, deploying documentation etc.)