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Recent Releases of CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - v2.0.3

What's Changed

  • Bump hypothesis from 6.68.3 to 6.70.0 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/27
  • Bump coverage from 7.2.1 to 7.2.2 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/28
  • Bump beautifulsoup4 from 4.11.2 to 4.12.0 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/29
  • Bump hypothesis from 6.70.0 to 6.70.2 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/30
  • Bump coverage from 7.2.2 to 7.2.3 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/31
  • Bump beautifulsoup4 from 4.12.0 to 4.12.2 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/34
  • Bump pytest from 7.2.2 to 7.3.0 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/33
  • Bump hypothesis from 6.70.2 to 6.71.0 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/32
  • Bump pytest from 7.3.0 to 7.3.1 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/36
  • Bump hypothesis from 6.71.0 to 6.72.0 by @dependabot in https://github.com/rvhonorato/cazy-parser/pull/35
  • Fix dev dependencies versions by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/41
  • Retrieve only the experimentally characterized cazy by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/43

New Contributors

  • @dependabot made their first contribution in https://github.com/rvhonorato/cazy-parser/pull/27

Full Changelog: https://github.com/rvhonorato/cazy-parser/compare/v2.0.2...v2.0.3

Scientific Software - Peer-reviewed - Python
Published by rvhonorato over 2 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - v2.0.2

What's Changed

  • use trunk for linting by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/25
  • use poetry by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/26
  • add fallback when sequences cannot be downloaded by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/24

Full Changelog: https://github.com/rvhonorato/cazy-parser/compare/v2.0.1...v2.0.2

Scientific Software - Peer-reviewed - Python
Published by rvhonorato about 3 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - v2.0.1

What's Changed

  • remove test dependency on family size by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/20

Full Changelog: https://github.com/rvhonorato/cazy-parser/compare/v2.0.0...v2.0.1

Scientific Software - Peer-reviewed - Python
Published by rvhonorato over 3 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - v2.0.0

This is a major update to the previous version, cazy-parser now directly downloads the fasta sequences from NCBI without the need of making a database and parsing it.

What's Changed

  • Add linting/testing actions by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/14
  • code-wide linting by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/15
  • Implement v2.0.0 by @rvhonorato in https://github.com/rvhonorato/cazy-parser/pull/16

Full Changelog: https://github.com/rvhonorato/cazy-parser/compare/v1.4.2...v2.0.0

Scientific Software - Peer-reviewed - Python
Published by rvhonorato about 4 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - cazy-parser v1.4.2

few bugfixes and features

Scientific Software - Peer-reviewed - Python
Published by rvhonorato over 7 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - cazy-parser v1.3

Now with progress bars!

Scientific Software - Peer-reviewed - Python
Published by rvhonorato over 7 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - cazy-parser v1.1

Fixed an issue when obtaining page indexes

Scientific Software - Peer-reviewed - Python
Published by rvhonorato about 9 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - cazy-parser: A way to extract specific information from the CAZy database.

Final release of cazy-parser, published at JOSS.

Please refer to this link for full documentation and project details.

Scientific Software - Peer-reviewed - Python
Published by rvhonorato over 9 years ago

CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - First

Release 1.0 of cazy-parser

Scientific Software - Peer-reviewed - Python
Published by rvhonorato almost 10 years ago