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Open Source Science

tskit-site

tskit website

https://github.com/tskit-dev/tskit-site

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

tskit website

Basic Info
  • Host: GitHub
  • Owner: tskit-dev
  • License: other
  • Language: HTML
  • Default Branch: main
  • Size: 31 MB
Statistics
  • Stars: 0
  • Watchers: 4
  • Forks: 4
  • Open Issues: 24
  • Releases: 0
Created over 5 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License Citation

README.md

tskit.dev

This repo is the source code for http://tskit.dev

The site is made with jekyll and built with grunt.

Dependencies

gem install --user-install bundler jekyll bundle install

Building the site

To build the site you will need a github auth token (for API requests, no permissions are needed on the token) GITHUB_TOKEN=YOUR_TOKEN_HERE grunt dev

Data sources

News, software and resources are the jekyll collections driving the site. The front matter of each file in their respective directories provides the metadata for each entry, which is supplemented with information from API requests by plugins. Any information in front matter overrides that from API requests - useful for fixing bad publication info for instance. To not hit rate limiters API requests are cached, to clear the cache rm /tmp/open-uri-*.

To add a new item create an additional file in either the _software, _news or _resources directory. Refer to the existing files for the required YAML keys in the front matter. Any images needed should be places in the assets/images folder and referred to with this template: {{ '/assets/images/PATH/TO/file.svg' | relative_url}} this will cause the file to be added to the build.

Testing a PR

It can be tedious to get a site build running locally, e.g. for testing changes. The easiest way to see the effect of a change to the site is to make a PR, which runs CI checks. As part of those checks, a copy of the site is made available for download as a GitHub "artifact". To locate the URL for download, click "Show all checks" link in the PR merge box, click on the "details" link for the penultimate item: "Build and deploy site / Deploy 🚀 (if on main branch)". At the bottom of the resulting actions, under "Upload site (for PR inspection)" you should find an "Artefact download URL". An easy way to inspect the downloaded site is then to run python -m http.server from within the downloaded directory, and then point a browser at the resulting server, usually at http://localhost:8000.

Owner

  • Name: Tskit developers
  • Login: tskit-dev
  • Kind: organization
  • Email: admin@tskit.dev

Software for the creation and analysis of tree-sequences.

Citation (citations.html) 

---
layout: page
title: Citation
description: A list of the citation resources for different tskit ecosystem software.
permalink: /citation/
---

{% assign sorted_apps = site.software | sort: "priority" %}
{% assign filtered_apps = sorted_apps | where: "gh_org", "tskit-dev" %}

{% assign page_apps = filtered_apps %}
<section class="section section--cards section--cards--type-3">
  <div class="container">
    <div class="row">
      <div class="col-md-12">
        <h2 class="section__heading">How to cite tskit-dev software</h2>
      </div>
    </div>
    {% for app in page_apps %}
      {% if app.citation_url %}
        {% include software-citation.html app=app %}
      {% endif %}
    {% endfor %}
  </div>
</section>

GitHub Events

Total
  • Create event: 1
  • Issues event: 7
  • Delete event: 3
  • Member event: 1
  • Issue comment event: 31
  • Public event: 2
  • Push event: 574
  • Pull request review comment event: 1
  • Pull request review event: 7
  • Pull request event: 64
  • Fork event: 4
Last Year
  • Create event: 1
  • Issues event: 7
  • Delete event: 3
  • Member event: 1
  • Issue comment event: 31
  • Public event: 2
  • Push event: 574
  • Pull request review comment event: 1
  • Pull request review event: 7
  • Pull request event: 64
  • Fork event: 4

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 5
  • Total pull requests: 28
  • Average time to close issues: 10 months
  • Average time to close pull requests: 14 days
  • Total issue authors: 4
  • Total pull request authors: 4
  • Average comments per issue: 0.8
  • Average comments per pull request: 0.11
  • Merged pull requests: 18
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 19
  • Average time to close issues: N/A
  • Average time to close pull requests: about 2 hours
  • Issue authors: 0
  • Pull request authors: 4
  • Average comments per issue: 0
  • Average comments per pull request: 0.05
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • benjeffery (4)
  • hyanwong (3)
  • jeromekelleher (2)
  • petrelharp (1)
Pull Request Authors
  • benjeffery (27)
  • hyanwong (11)
  • petrelharp (3)
  • hossam26644 (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/build-deploy.yml actions
  • JamesIves/github-pages-deploy-action 3.7.1 composite
  • actions/cache v3 composite
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/download-artifact v2 composite
  • actions/setup-node v3 composite
  • actions/setup-python v2 composite
  • actions/setup-python v4 composite
  • actions/setup-ruby v1 composite
  • actions/upload-artifact v2 composite
  • styfle/cancel-workflow-action 0.6.0 composite
  • styfle/cancel-workflow-action 0.7.0 composite
package-lock.json npm
  • 532 dependencies
package.json npm
  • @babel/core ^7.16.5 development
  • @babel/preset-env ^7.16.5 development
  • @lodder/grunt-postcss ^3.1.1 development
  • autoprefixer 10.4.5 development
  • babelify ^10.0.0 development
  • cssnano ^5.0.12 development
  • grunt ^1.4.1 development
  • grunt-browserify ^6.0.0 development
  • grunt-contrib-uglify ^5.0.1 development
  • grunt-contrib-watch ^1.1.0 development
  • grunt-jekyll ^1.0.1 development
  • grunt-sass ^3.1.0 development
  • grunt-sass-tilde-importer ^1.0.2 development
  • postcss ^8.4.4 development
  • sass ^1.44.0 development
  • @popperjs/core ^2.11.2
  • bootstrap ^5.1.3
  • gsap ^3.10.4
  • jquery ^3.6.0
Gemfile rubygems
  • jekyll-feed ~> 0.6 development
  • jekyll-theme-cayman >= 0 development
  • jekyll-timeago >= 0 development
  • font-awesome-sass ~> 5.15.1
  • hash-joiner >= 0
  • httparty >= 0
  • jekyll ~> 3.8.6
  • jekyll-font-awesome-sass >= 0
  • jekyll-redirect-from >= 0
  • minima ~> 2.0
  • open-uri-cached >= 0
  • tzinfo ~> 1.2
  • tzinfo-data >= 0
Gemfile.lock rubygems
  • addressable 2.8.0
  • colorator 1.1.0
  • concurrent-ruby 1.1.10
  • em-websocket 0.5.3
  • eventmachine 1.2.7
  • ffi 1.15.5
  • font-awesome-sass 5.15.1
  • forwardable-extended 2.6.0
  • hash-joiner 0.0.7
  • http_parser.rb 0.8.0
  • httparty 0.20.0
  • i18n 0.9.5
  • jekyll 3.8.7
  • jekyll-feed 0.16.0
  • jekyll-font-awesome-sass 0.1.1
  • jekyll-redirect-from 0.16.0
  • jekyll-sass-converter 1.5.2
  • jekyll-seo-tag 2.8.0
  • jekyll-theme-cayman 0.2.0
  • jekyll-timeago 0.14.0
  • jekyll-watch 2.2.1
  • kramdown 1.17.0
  • liquid 4.0.3
  • listen 3.7.1
  • mercenary 0.3.6
  • mime-types 3.4.1
  • mime-types-data 3.2022.0105
  • mini_i18n 0.8.0
  • minima 2.5.1
  • multi_xml 0.6.0
  • open-uri-cached 1.0.0
  • pathutil 0.16.2
  • public_suffix 4.0.7
  • rb-fsevent 0.11.1
  • rb-inotify 0.10.1
  • rouge 3.29.0
  • safe_yaml 1.0.5
  • sass 3.7.4
  • sass-listen 4.0.0
  • sassc 2.4.0
  • thread_safe 0.3.6
  • tzinfo 1.2.9
  • tzinfo-data 1.2022.1
  • wdm 0.1.1