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popeye

popeye: a population receptive field estimation tool - Published in JOSS (2016)

https://github.com/kdesimone/popeye

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org, zenodo.org
  • ✓
    Committers with academic emails
    3 of 16 committers (18.8%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 6 months ago · JSON representation

Repository

A population receptive field estimation tool

Basic Info
Statistics
  • Stars: 34
  • Watchers: 7
  • Forks: 14
  • Open Issues: 0
  • Releases: 9
Created over 12 years ago · Last pushed almost 5 years ago
Metadata Files
Readme License

README.md

TravisCI Coverage JOSS DOI PyPI version

popeye

popeye is a Python module for estimating population receptive fields from fMRI data built on top of SciPy and distributed under the 3-Clause BSD license.

Documentation for popeye and contact information for the authors are available at https://kdesimone.github.io/popeye

popeye is currently under development.

31 July 2013 kevin desimone kevindesimone@gmail.com

Dependencies

Popeye is tested to work under Python 2.7 and Python 3.5

The required dependencies to build the software are NumPy >= 1.6.2, SciPy >= 0.9, Nibabel >= 1.3.0, Cython >= 0.18, sharedmem >= 0.3, and statsmodels >= 0.6.

For running the tests you need nose >= 1.1.2.

Install

You can install popeye and its dependencies through PyPi:

pip install popeye

Or you can install from the source. To install in your home directory, use:

python setup.py install --user

To install for all users on Unix/Linux:

python setup.py build
sudo python setup.py install

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Owner

  • Name: Kevin DeSimone
  • Login: kdesimone
  • Kind: user
  • Location: Halifax, NS
  • Company: Integral

Ask questions first, shoot later.

JOSS Publication

popeye: a population receptive field estimation tool
Published
December 01, 2016
DOI
Volume 1, Issue 8, Page 103
Authors
Kevin DeSimone ORCID
New York University
Ariel Rokem ORCID
University of Washington
Keith Schneider ORCID
University of Delaware
Editor
Christopher R. Madan ORCID
Tags
pRF fMRI neuroscience
View PDF Review Thread Software Archive

Papers & Mentions

Total mentions: 1

Distinguishing Hemodynamics from Function in the Human LGN Using a Temporal Response Model
Last synced: 4 months ago

GitHub Events

Total
  • Issues event: 1
  • Watch event: 1
  • Pull request event: 2
Last Year
  • Issues event: 1
  • Watch event: 1
  • Pull request event: 2

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 1,503
  • Total Committers: 16
  • Avg Commits per committer: 93.938
  • Development Distribution Score (DDS): 0.088
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
kdesimone k****e@g****m 1,370
arokem a****m@g****m 55
Kevin DeSimone k****n@l****u 28
Matthias Ekman m****n@g****m 9
Kevin DeSimone k****n@o****a 7
Noah C. Benson n@n****t 6
Kevin Desimone k****5@l****l 6
Michael Waskom m****m@n****u 5
Gio at UMCU g****b@g****m 4
Kevin k****n@i****a 3
Kevin k****n@i****a 2
Kevin k****n@s****a 2
Kevin Desimone k****5@l****l 2
Kevin Desimone k****5@l****l 2
kevin desimone k****n@1****U 1
kevin desimone k****n@d****l 1
Committer Domains (Top 20 + Academic)
172-17-61-42.dynapool.nyu.edu: 1 sherman-1009.oru.yorku.ca: 1 ip-130-63-40-97.dynamic.yorku.ca: 1 ip-130-63-40-105.dynamic.yorku.ca: 1 gpiantoni.com: 1 nyu.edu: 1 nben.net: 1 obelix.mri.yorku.ca: 1 loki.psych.nyu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 26
  • Total pull requests: 40
  • Average time to close issues: over 1 year
  • Average time to close pull requests: 7 months
  • Total issue authors: 9
  • Total pull request authors: 6
  • Average comments per issue: 2.19
  • Average comments per pull request: 3.8
  • Merged pull requests: 32
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • kdesimone (12)
  • mekman (5)
  • mwaskom (2)
  • arokem (2)
  • mdunne34 (1)
  • MarkusS42 (1)
  • tknapen (1)
  • noahbenson (1)
  • ingo-m (1)
Pull Request Authors
  • arokem (21)
  • mekman (9)
  • kdesimone (5)
  • mwaskom (3)
  • noahbenson (3)
  • gpiantoni (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 46 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 9
  • Total maintainers: 1
pypi.org: popeye

popeye : voxel population receptive fields from fMRI data

  • Versions: 9
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 46 Last month
Rankings
Dependent packages count: 10.0%
Forks count: 10.5%
Stargazers count: 11.7%
Average: 16.0%
Dependent repos count: 21.7%
Downloads: 26.3%
Maintainers (1)
kdesimone
Last synced: 6 months ago