amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Science Score: 75.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: pubmed.ncbi, ncbi.nlm.nih.gov -
○Academic email domains
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✓Institutional organization owner
Organization ncbi has institutional domain (www.ncbi.nlm.nih.gov) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.8%) to scientific vocabulary
Keywords
Repository
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Basic Info
- Host: GitHub
- Owner: ncbi
- License: other
- Language: C++
- Default Branch: master
- Homepage: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
- Size: 2.57 MB
Statistics
- Stars: 320
- Watchers: 30
- Forks: 46
- Open Issues: 10
- Releases: 51
Topics
Metadata Files
README.md
NCBI Antimicrobial Resistance Gene Finder (AMRFinderPlus)
This software and the accompanying database are designed to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences. We have also added "plus" stress, heat, and biocide resistance and virulence factors for some organisms.
See the wiki for documentation
Citing AMRFinderPlus
Please subscribe to our announce list for announcements of database and software updates.
Licenses
PUBLIC DOMAIN NOTICE
National Center for Biotechnology Information
This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the authors' official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction.
Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose.
In any work or product derived from this material, proper attribution of the authors as the source of the software or data should be made, using the following citation:
Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep. 2021 Jun 16;11(1):12728. doi: 10.1038/s41598-021-91456-0. PMID: 34135355; PMCID: PMC8208984.
Owner
- Name: NCBI - National Center for Biotechnology Information/NLM/NIH
- Login: ncbi
- Kind: organization
- Email: github-tools@ncbi.nlm.nih.gov
- Website: http://www.ncbi.nlm.nih.gov
- Repositories: 99
- Profile: https://github.com/ncbi
Citation (CITATION.md)
Please see our [wiki instructions on citing AMRFinderPlus](https://github.com/ncbi/amr/wiki#citation) for more information on how to cite AMRFinderPlus. Importantly we ask that you include both the software version and database version in your methods so people can reproduce your results.
GitHub Events
Total
- Create event: 6
- Release event: 5
- Issues event: 24
- Watch event: 48
- Delete event: 2
- Issue comment event: 60
- Push event: 70
- Gollum event: 20
- Pull request event: 7
- Fork event: 10
Last Year
- Create event: 6
- Release event: 5
- Issues event: 24
- Watch event: 48
- Delete event: 2
- Issue comment event: 60
- Push event: 70
- Gollum event: 20
- Pull request event: 7
- Fork event: 10
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 77
- Total pull requests: 25
- Average time to close issues: about 1 month
- Average time to close pull requests: 6 days
- Total issue authors: 67
- Total pull request authors: 3
- Average comments per issue: 5.91
- Average comments per pull request: 0.48
- Merged pull requests: 23
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 15
- Pull requests: 7
- Average time to close issues: 17 days
- Average time to close pull requests: 8 minutes
- Issue authors: 15
- Pull request authors: 1
- Average comments per issue: 4.4
- Average comments per pull request: 0.0
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kapsakcj (5)
- kalilamali (3)
- cizydorczyk (2)
- dutchscientist (2)
- EricDeveaud (2)
- kristyhoran (2)
- flashton2003 (1)
- minjaekim45 (1)
- loalon (1)
- crarlus (1)
- fredotter (1)
- geboro (1)
- G-Molano-LA (1)
- nick-youngblut (1)
- pedrofteixeira (1)
Pull Request Authors
- evolarjun (24)
- kbipinkumar (3)
- sirselim (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v1 composite
- actions/checkout v1 composite
- actions/upload-artifact v2 composite
- actions/checkout v2 composite
- actions/checkout v1 composite
- actions/upload-artifact v2 composite
- actions/checkout v2 composite