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camtrapmonitoring

:package: camtrapmonitoring is an R package for planning and evaluating camera trap surveys and (soon) estimating wildlife density. Formerly named {wildcam}.

https://github.com/robitalec/camtrapmonitoring

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.0%) to scientific vocabulary

Keywords

camera-trap camera-traps r spatial wildlife
Last synced: 4 months ago · JSON representation ·

Repository

:package: camtrapmonitoring is an R package for planning and evaluating camera trap surveys and (soon) estimating wildlife density. Formerly named {wildcam}.

Basic Info
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Topics
camera-trap camera-traps r spatial wildlife
Created almost 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License Citation Codemeta

README.Rmd 

---
output: github_document
---



```{r setup, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = '#>',
  fig.path = 'man/figures/README-',
  out.width = '100%'
)
```


# camtrapmonitoring

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) 
[![camtrapmonitoring status badge](https://robitalec.r-universe.dev/badges/camtrapmonitoring)](https://robitalec.r-universe.dev/camtrapmonitoring) 
[![CRAN](https://www.r-pkg.org/badges/version/camtrapmonitoring)](https://cran.r-project.org/package=camtrapmonitoring)


{camtrapmonitoring} is an R package for camera trap monitoring and estimating 
wildlife density. 

- Candidate camera trap locations are sampled in a region of interest
- Spatial layers are used to evaluate characteristics and deployment 
feasibility of locations
- Candidate locations are ordered and selected by user criteria
- Grids are optionally established around focal locations
- (Soon) density estimation methods

## Installation

You can install the development version of camtrapmonitoring with:

```{r, eval = FALSE}
# r-universe
install.packages('camtrapmonitoring', repos = c('https://robitalec.r-universe.dev', 'https://cloud.r-project.org'))

# Or {remotes}
remotes::install_github('robitalec/camtrapmonitoring')
```


This package depends on {sf}, {terra}, and {distanceto}. 

More details on installation here:

- [`sf`: Installing](https://r-spatial.github.io/sf/#installing)
- [`terra`: Installing](https://rspatial.github.io/terra/#installation)



## Name

This package was previously named {wildcam} but renamed to {camtrapmonitoring} 
to reflect broadened scope of package from planning camera trap surveys to 
community based monitoring of wildlife and density estimation, and to avoid
confusion with other projects using camera traps named wildcam or similar.

Owner

  • Name: Alec L. Robitaille
  • Login: robitalec
  • Kind: user
  • Company: @wildlifeevoeco

(he/him/il)

Citation (CITATION.cff) 

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "camtrapmonitoring" in publications use:'
type: software
license: GPL-3.0-only
title: 'camtrapmonitoring: Camera Trap Monitoring For Estimating Wildlife Density'
version: 0.12.1
abstract: Evaluating potential camera trap locations. Potential locations are evaluated
  using relevant spatial layers producing a dataset of selected locations with covariates
  that can be used to quantify sampling bias. Soon - density estimation methods.
authors:
- family-names: Robitaille
  given-names: Alec L.
  email: robit.alec@gmail.com
  orcid: https://orcid.org/0000-0002-4706-1762
repository-code: https://github.com/robitalec/camtrapmonitoring
url: https://robitalec.github.io/camtrapmonitoring/
contact:
- family-names: Robitaille
  given-names: Alec L.
  email: robit.alec@gmail.com
  orcid: https://orcid.org/0000-0002-4706-1762
keywords:
- camera-trap
- camera-traps
- r
- spatial
- wildlife
references:
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
- type: software
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  repository: https://CRAN.R-project.org/package=rmarkdown
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    given-names: JJ
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  - family-names: Xie
    given-names: Yihui
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  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
- type: software
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  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Suggests
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  year: '2024'
- type: software
  title: usethis
  abstract: 'usethis: Automate Package and Project Setup'
  notes: Suggests
  url: https://usethis.r-lib.org
  repository: https://CRAN.R-project.org/package=usethis
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  - family-names: Barrett
    given-names: Malcolm
    email: malcolmbarrett@gmail.com
    orcid: https://orcid.org/0000-0003-0299-5825
  - family-names: Teucher
    given-names: Andy
    email: andy.teucher@posit.co
    orcid: https://orcid.org/0000-0002-7840-692X
  year: '2024'
- type: software
  title: osmdata
  abstract: 'osmdata: Import ''OpenStreetMap'' Data as Simple Features or Spatial
    Objects'
  notes: Suggests
  url: https://docs.ropensci.org/osmdata/
  repository: https://CRAN.R-project.org/package=osmdata
  authors:
  - family-names: Padgham
    given-names: Mark
    email: mark.padgham@email.com
  - family-names: Rudis
    given-names: Bob
  - family-names: Lovelace
    given-names: Robin
  - family-names: Salmon
    given-names: Maëlle
  - family-names: Maspons
    given-names: Joan
    orcid: https://orcid.org/0000-0003-2286-8727
  year: '2024'
  identifiers:
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- type: software
  title: elevatr
  abstract: 'elevatr: Access Elevation Data from Various APIs'
  notes: Suggests
  url: https://github.com/jhollist/elevatr/
  repository: https://CRAN.R-project.org/package=elevatr
  authors:
  - family-names: Hollister
    given-names: Jeffrey
    email: hollister.jeff@epa.gov
    orcid: https://orcid.org/0000-0002-9254-9740
  year: '2024'
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Imports
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2024'
  version: '>= 0.7-3'
- type: software
  title: terra
  abstract: 'terra: Spatial Data Analysis'
  notes: Imports
  url: https://rspatial.org/
  repository: https://CRAN.R-project.org/package=terra
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
    orcid: https://orcid.org/0000-0001-5872-2872
  year: '2024'
- type: software
  title: distanceto
  abstract: 'distanceto: Calculate Distance to Features'
  notes: Imports
  url: https://robitalec.github.io/distance-to/
  repository: https://robitalec.r-universe.dev
  authors:
  - family-names: Robitaille
    given-names: Alec L.
    email: robit.alec@gmail.com
    orcid: https://orcid.org/0000-0002-4706-1762
  year: '2024'
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2024'
  institution:
    name: R Foundation for Statistical Computing
  version: '>= 4.0'

CodeMeta (codemeta.json) 

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GitHub Events

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Last synced: 6 months ago

All Time
  • Total Commits: 614
  • Total Committers: 1
  • Avg Commits per committer: 614.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
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  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
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Name Email Commits
Alec Robitaille r****c@g****m 614

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Last synced: 6 months ago

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  • Total issues: 2
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  • Average time to close pull requests: about 7 hours
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  • Average comments per issue: 0.5
  • Average comments per pull request: 0.05
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  • Bot issues: 0
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Past Year
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Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • data.table * imports
  • raster * imports
  • sf >= 0.7 imports
  • units * imports
  • testthat * suggests
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite