https://github.com/inutano/bioruby-fastqc
A ruby parser for FastQC data.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 6 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.7%) to scientific vocabulary
Repository
A ruby parser for FastQC data.
Basic Info
- Host: GitHub
- Owner: inutano
- License: mit
- Language: Ruby
- Default Branch: master
- Homepage: https://github.com/inutano/bioruby-fastqc
- Size: 1.42 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
bio-fastqc
A ruby parser for FastQC data.
Reqruirements
Ruby 2.0 or later
Installation
sh
gem install bio-fastqc
Usage
```ruby require 'bio-fastqc'
extract data from zipfile
zipfile = "/path/to/datafastqc.zip" data = Bio::FastQC::Data.read(zip_file) parser = Bio::FastQC::Parser.new(data) parser.summary ```
Parse FastQC data as json format by command line tool:
sh
$ fastqc-util parse /path/to/data_fastqc.zip
Project home page
Information on the source tree, documentation, examples, issues and how to contribute, see
http://github.com/inutano/bioruby-fastqc
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
Cite
If you use this software, please cite one of
- BioRuby: bioinformatics software for the Ruby programming language
- Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Biogems.info
This Biogem is published at (http://biogems.info/index.html#bio-fastqc)
Copyright
Copyright (c) 2015 Tazro Inutano Ohta. See LICENSE.txt for further details.
Owner
- Name: Tazro Inutano Ohta
- Login: inutano
- Kind: user
- Location: Tokyo
- Company: @DBCLS
- Website: https://orcid.org/0000-0003-3777-5945
- Twitter: inutano
- Repositories: 58
- Profile: https://github.com/inutano
#WeAreHackersWeDance
GitHub Events
Total
Last Year
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Tazro Inutano Ohta | i****o@g****m | 149 |
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- rubygems 127,766 total
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Total dependent packages: 1
(may contain duplicates) -
Total dependent repositories: 2
(may contain duplicates) - Total versions: 54
- Total maintainers: 1
gem.coop: bio-fastqc
ruby parser for FastQC, a quality control software for high-throughput sequencing data.
- Homepage: http://github.com/inutano/bioruby-fastqc
- Documentation: http://www.rubydoc.info/gems/bio-fastqc/
- License: MIT
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Latest release: 0.10.8
published over 7 years ago
Rankings
Maintainers (1)
rubygems.org: bio-fastqc
ruby parser for FastQC, a quality control software for high-throughput sequencing data.
- Homepage: http://github.com/inutano/bioruby-fastqc
- Documentation: http://www.rubydoc.info/gems/bio-fastqc/
- License: MIT
-
Latest release: 0.10.8
published over 7 years ago