mip-dmp - v0.0.7

The MIP Dataset Mapper (mip_dmp) is an open-source Python tool with a Graphical User Interface that maps datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP). It is developed to support members of a MIP Federation in the task of mapping their dataset to the CDEs schema of this federation.

This corresponds to the v0.0.7 release 🚀

What's Changed * Extra adjustment of the graphical user interface and addition of illustration by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/19 * Add sebastientourbier as a contributor for bug, code, and 9 more by @allcontributors in https://github.com/HBPMedical/mip-dmp/pull/21 * Add BSchaffhauser as a contributor for financial, and fundingFinding by @allcontributors in https://github.com/HBPMedical/mip-dmp/pull/22 * Move io, logger and parser modules to new mip_dmp.utils subpackage by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/23 * Add html documentation by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/26 * Make release v0.0.7 by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/25

New Contributors

• @allcontributors made their first contribution in https://github.com/HBPMedical/mip-dmp/pull/21

Full Changelog: https://github.com/HBPMedical/mip-dmp/compare/0.0.6...0.0.7

- Python
Published by sebastientourbier over 2 years ago

mip-dmp - v0.0.6

The MIP Dataset Mapper (mip_dmp) is an open-source Python tool with a Graphical User Interface that maps datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP). It is developed to support members of a MIP Federation in the task of mapping their dataset to the CDEs schema of this federation.

This corresponds to the v0.0.6 release 🚀

What's Changed

• Handle png for buttons as package_data in setup.cfg by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/17
• Improve UI usability after meeting with Pauline by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/18

Full Changelog: https://github.com/HBPMedical/mip-dmp/compare/0.0.5...0.0.6

- Python
Published by sebastientourbier over 2 years ago

mip-dmp - v0.0.5

The MIP Dataset Mapper (mip_dmp) is an open-source Python tool with a Graphical User Interface that maps datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP). It is developed to support members of a MIP Federation in the task of mapping their dataset to the CDEs schema of this federation.

This corresponds to the v0.0.5 release 🚀

What's Changed

• Fix: generate dataset with all cde columns by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/16

Full Changelog

• https://github.com/HBPMedical/mip-dmp/compare/0.0.4...0.0.5

- Python
Published by sebastientourbier over 2 years ago

mip-dmp - v0.0.4

The MIP Dataset Mapper (mip_dmp) is an open-source Python tool with a Graphical User Interface that maps datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP). It is developed to support members of a MIP Federation in the task of mapping their dataset to the CDEs schema of this federation.

Full Changelog

https://github.com/HBPMedical/mip-dmp/compare/0.0.3...0.0.4

- Python
Published by sebastientourbier over 2 years ago

mip-dmp - v0.0.3

The MIP Dataset Mapper (mip_dmp) is an open-source Python tool with a Graphical User Interface that maps datasets to a specific Common Data Elements (CDEs) metadata schema of a federation of the Medical Informatics Platform (MIP). It is developed to support members of a MIP Federation in the task of mapping their dataset to the CDEs schema of this federation.

Full Changelog

• https://github.com/HBPMedical/mip-dmp/compare/0.0.2...0.0.3

- Python
Published by sebastientourbier over 2 years ago

mip-dmp - v0.0.2

What's Changed

• refactor+feat: refine widget for embedding visualization and ad widget to visualize matching distance results by @sebastientourbier in https://github.com/HBPMedical/mip-dmp/pull/15

Full Changelog: https://github.com/HBPMedical/mip-dmp/compare/0.0.1...0.0.2

- Python
Published by sebastientourbier almost 3 years ago

mip-dmp - v0.0.1

This is the very first release of the MIP Dataset Mapper (mip_dmp), namely v0.0.1, which includes for now:

• mip_dataset_mapper_ui: a graphical user interface (GUI), empowered by PySide2, which allows to:

  1. load an input dataset (.csv),
  2. load the target CDEs schema (.xlxs),
  3. assist in the process of matching column names of the input dataset to the CDE codes of the schema via fuzzy and embedding techniques,
  4. provide a widget for the visualization of the embedding-based matches,
  5. refine/edit the matching, check its consitency, and save it for later re-use,
  6. perform the dataset mapping to generate a new dataset that complies to the CDEs schema.

• mip_dataset_mapper: a command line interface that can use an existing mapping file generated by the GUI to perform the dataset mapping.

- Python
Published by sebastientourbier almost 3 years ago