fluidimage

:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)

https://github.com/fluiddyn/fluidimage

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (15.3%) to scientific vocabulary

Keywords

image-processing particle-image-velocimetry piv postprocessing

Last synced: 6 months ago · JSON representation ·

Repository

:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)

Basic Info

Host: GitHub
Owner: fluiddyn
License: other
Language: Python
Default Branch: branch/default
Homepage: https://foss.heptapod.net/fluiddyn/fluidimage
Size: 26.4 MB

Statistics

Stars: 18
Watchers: 5
Forks: 4
Open Issues: 0
Releases: 0

Topics

image-processing particle-image-velocimetry piv postprocessing

Created over 8 years ago · Last pushed 9 months ago

Metadata Files

Readme Changelog Contributing License Citation Authors

FluidImage

Supported Python versions

FluidImage is a free and open-source Python framework to process images of fluids (in particular with PIV), and analyse the resulting fields.

Documentation: http://fluidimage.readthedocs.org

Image processing for fluid mechanics is still dominated by proprietary tools. Such tools are not ideal when you want to understand and tweak the algorithms and/or to use clusters. There are also good and useful PIV software (PIVlab, UVmat) written in Matlab, which is itself proprietary.

With the improvement of the Python numerical ecosystem and of tools for collaborative development, one can think it is possible to build together a good community-driven library/toolkit specialized in image processing for fluid mechanics. This is our project with FluidImage.

Fluidimage has now grown into a clean software reimplementing in modern Python algorithms and ideas taken from UVmat, OpenPIV, PIVlab and PIVmat with a focus on performance, usability and maintanability. However, Fluidimage is not restricted to Particle Image Velocimetry computations (PIV, i.e. displacements of pattern obtained by correlations of cropped images) and can be used to

display and pre-process images,
compute displacement or velocity fields with PIV, Background-Oriented Schlieren (BOS) and optical flow,
analyze and display vector and scalar fields.

We want to make FluidImage easy (useful documentation, easy installation, nice API, usable with simple scripts and few simple graphical user interfaces), reliable (with good unittests) and very efficient, in particular when the number of images is large. Thus we want FluidImage to be able to run efficiently and easily on a personal computer and on big clusters. The efficiency is achieved by using

a framework for asynchronous computations (currently, we use Trio) and an associated API to define "topologies" of parallel computations.
parallelism to efficiently use the available cores of the Central Processing Units (CPU),
good profiling and efficient and specialized algorithms,
cutting-edge tools for fast computations with Python (in particular Pythran through Transonic).

Owner

Name: FluidDyn
Login: fluiddyn
Kind: organization

Website: https://fluiddyn.netlify.app
Repositories: 3
Profile: https://github.com/fluiddyn

FluidDyn project | framework for research and teaching in fluid dynamics - git mirror

Citation (CITATION.cff)

cff-version: 1.2.0
message: If you use this software, please cite it using these metadata.
title: "Fluidimage: a Python framework to study flows from images"
abstract: |
  Fluid mechanics experimental studies are often based on image processing,
  with various algorithms such as Particle Image Velocimetry (PIV) or
  Light Induced Fluorescence (LIF) used to compute velocity, vorticity, concentration
  or temperature fields. Fluidimage is a free and open-source Python framework
  to process images of fluids and analyse the resulting fields.
authors:

  - family-names: Augier
    given-names: Pierre
    orcid: https://orcid.org/0000-0001-9481-4459

# Note: the values of "version" and "date-released" might not correspond to the last uploaded version.
# The correct values are in the file pyproject.toml and CHANGES.md.
version: 0.5.2
date-released: "2024-05-24"
identifiers:
  - description: This is the collection of archived snapshots of all versions of Fluidimage
    type: doi
    value: "10.5281/zenodo.11359207"
license: CECILL-2.1
repository-code: "https://foss.heptapod.net/fluiddyn/fluidimage"

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Average comments per pull request: 2.0
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Bot pull requests: 1

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Dependencies

.github/workflows/ci.yaml actions

actions/checkout v3 composite
actions/setup-python v4 composite
codecov/codecov-action v3 composite

environment.yml conda

fftw
h5py
jupyter
matplotlib
mpi4py
numpy
pyfftw
python 3.6.*
scipy

requirements/dev.txt pypi

alabaster ==0.7.12 development
anyio ==3.6.2 development
argon2-cffi ==21.3.0 development
argon2-cffi-bindings ==21.2.0 development
arrow ==1.2.3 development
asttokens ==2.2.1 development
async-generator ==1.10 development
attrs ==22.1.0 development
autopep8 ==2.0.0 development
babel ==2.11.0 development
backcall ==0.2.0 development
beautifulsoup4 ==4.11.1 development
beniget ==0.4.1 development
bleach ==5.0.1 development
certifi ==2022.12.7 development
cffi ==1.15.1 development
charset-normalizer ==2.1.1 development
click ==8.1.3 development
cloudpickle ==2.2.0 development
comm ==0.1.2 development
commonmark ==0.9.1 development
contourpy ==1.0.6 development
coverage ==6.5.0 development
cycler ==0.11.0 development
dask ==2022.12.0 development
debugpy ==1.6.4 development
decorator ==5.1.1 development
defusedxml ==0.7.1 development
distro ==1.8.0 development
docutils ==0.17.1 development
entrypoints ==0.4 development
exceptiongroup ==1.0.4 development
executing ==1.2.0 development
fastjsonschema ==2.16.2 development
fluiddyn ==0.5.1 development
fonttools ==4.38.0 development
fqdn ==1.5.1 development
fsspec ==2022.11.0 development
gast ==0.5.3 development
h5netcdf ==1.1.0 development
h5py ==3.7.0 development
idna ==3.4 development
imageio ==2.22.4 development
imagesize ==1.4.1 development
importlib-metadata ==5.1.0 development
iniconfig ==1.1.1 development
ipykernel ==6.19.2 development
ipython ==8.7.0 development
ipython-genutils ==0.2.0 development
ipywidgets ==8.0.3 development
isoduration ==20.11.0 development
jedi ==0.18.2 development
jinja2 ==3.1.2 development
jsonpointer ==2.3 development
jsonschema ==4.17.3 development
jupyter ==1.0.0 development
jupyter-client ==7.4.8 development
jupyter-console ==6.4.4 development
jupyter-core ==5.1.0 development
jupyter-events ==0.5.0 development
jupyter-server ==2.0.1 development
jupyter-server-terminals ==0.4.2 development
jupyterlab-pygments ==0.2.2 development
jupyterlab-widgets ==3.0.4 development
kiwisolver ==1.4.4 development
locket ==1.0.0 development
markupsafe ==2.1.1 development
matplotlib ==3.6.2 development
matplotlib-inline ==0.1.6 development
mistune ==2.0.4 development
nbclassic ==0.4.8 development
nbclient ==0.7.2 development
nbconvert ==7.2.6 development
nbformat ==5.7.0 development
nbsphinx ==0.8.10 development
nest-asyncio ==1.5.6 development
networkx ==2.8.8 development
notebook ==6.5.2 development
notebook-shim ==0.2.2 development
numpy ==1.23.5 development
numpydoc ==1.5.0 development
opencv-python ==4.6.0.66 development
outcome ==1.2.0 development
packaging ==22.0 development
pandocfilters ==1.5.0 development
parso ==0.8.3 development
partd ==1.3.0 development
pexpect ==4.8.0 development
pickleshare ==0.7.5 development
pillow ==9.3.0 development
pims ==0.6.1 development
platformdirs ==2.6.0 development
pluggy ==1.0.0 development
prometheus-client ==0.15.0 development
prompt-toolkit ==3.0.36 development
psutil ==5.9.4 development
ptyprocess ==0.7.0 development
pure-eval ==0.2.2 development
pycodestyle ==2.10.0 development
pycparser ==2.21 development
pyfftw ==0.13.0 development
pygments ==2.13.0 development
pyparsing ==3.0.9 development
pyqt5 ==5.14.2 development
pyqt5-sip ==12.11.0 development
pyrsistent ==0.19.2 development
pytest ==7.2.0 development
pytest-cov ==4.0.0 development
pytest-qt ==4.2.0 development
python-dateutil ==2.8.2 development
python-json-logger ==2.0.4 development
pytz ==2022.6 development
pywavelets ==1.4.1 development
pyyaml ==6.0 development
pyzmq ==24.0.1 development
qtconsole ==5.4.0 development
qtpy ==2.3.0 development
recommonmark ==0.7.1 development
requests ==2.28.1 development
rfc3339-validator ==0.1.4 development
rfc3986-validator ==0.1.1 development
scikit-image ==0.19.3 development
scipy ==1.9.3 development
send2trash ==1.8.0 development
six ==1.16.0 development
slicerator ==1.1.0 development
sniffio ==1.3.0 development
snowballstemmer ==2.2.0 development
sortedcontainers ==2.4.0 development
soupsieve ==2.3.2.post1 development
sphinx ==5.3.0 development
sphinx-rtd-theme ==1.1.1 development
sphinxcontrib-applehelp ==1.0.2 development
sphinxcontrib-devhelp ==1.0.2 development
sphinxcontrib-htmlhelp ==2.0.0 development
sphinxcontrib-jsmath ==1.0.1 development
sphinxcontrib-qthelp ==1.0.3 development
sphinxcontrib-serializinghtml ==1.1.5 development
stack-data ==0.6.2 development
terminado ==0.17.1 development
tifffile ==2022.10.10 development
tinycss2 ==1.2.1 development
tomli ==2.0.1 development
toolz ==0.12.0 development
tornado ==6.2 development
traitlets ==5.7.0 development
transonic ==0.5.1 development
trio ==0.22.0 development
uri-template ==1.2.0 development
urllib3 ==1.26.13 development
wcwidth ==0.2.5 development
webcolors ==1.12 development
webencodings ==0.5.1 development
websocket-client ==1.4.2 development
widgetsnbextension ==4.0.4 development
zipp ==3.11.0 development

requirements/doc.txt pypi

150 dependencies

requirements/main.txt pypi

asttokens ==2.2.1
async-generator ==1.10
attrs ==22.1.0
autopep8 ==2.0.0
backcall ==0.2.0
beniget ==0.4.1
click ==8.1.3
cloudpickle ==2.2.0
contourpy ==1.0.6
cycler ==0.11.0
dask ==2022.12.0
decorator ==5.1.1
distro ==1.8.0
exceptiongroup ==1.0.4
executing ==1.2.0
fluiddyn ==0.5.1
fonttools ==4.38.0
fsspec ==2022.11.0
gast ==0.5.3
h5netcdf ==1.1.0
h5py ==3.7.0
idna ==3.4
imageio ==2.22.4
ipython ==8.7.0
jedi ==0.18.2
kiwisolver ==1.4.4
locket ==1.0.0
matplotlib ==3.6.2
matplotlib-inline ==0.1.6
networkx ==2.8.8
numpy ==1.23.5
opencv-python ==4.6.0.66
outcome ==1.2.0
packaging ==22.0
parso ==0.8.3
partd ==1.3.0
pexpect ==4.8.0
pickleshare ==0.7.5
pillow ==9.3.0
pims ==0.6.1
prompt-toolkit ==3.0.36
psutil ==5.9.4
ptyprocess ==0.7.0
pure-eval ==0.2.2
pycodestyle ==2.10.0
pyfftw ==0.13.0
pygments ==2.13.0
pyparsing ==3.0.9
python-dateutil ==2.8.2
pywavelets ==1.4.1
pyyaml ==6.0
qtpy ==2.3.0
scikit-image ==0.19.3
scipy ==1.9.3
six ==1.16.0
slicerator ==1.1.0
sniffio ==1.3.0
sortedcontainers ==2.4.0
stack-data ==0.6.2
tifffile ==2022.10.10
tomli ==2.0.1
toolz ==0.12.0
traitlets ==5.7.0
transonic ==0.5.1
trio ==0.22.0
wcwidth ==0.2.5

requirements/test.txt pypi

asttokens ==2.2.1 test
async-generator ==1.10 test
attrs ==22.1.0 test
autopep8 ==2.0.0 test
backcall ==0.2.0 test
beniget ==0.4.1 test
click ==8.1.3 test
cloudpickle ==2.2.0 test
contourpy ==1.0.6 test
coverage ==6.5.0 test
cycler ==0.11.0 test
dask ==2022.12.0 test
decorator ==5.1.1 test
distro ==1.8.0 test
exceptiongroup ==1.0.4 test
executing ==1.2.0 test
fluiddyn ==0.5.1 test
fonttools ==4.38.0 test
fsspec ==2022.11.0 test
gast ==0.5.3 test
h5netcdf ==1.1.0 test
h5py ==3.7.0 test
idna ==3.4 test
imageio ==2.22.4 test
iniconfig ==1.1.1 test
ipython ==8.7.0 test
jedi ==0.18.2 test
kiwisolver ==1.4.4 test
locket ==1.0.0 test
matplotlib ==3.6.2 test
matplotlib-inline ==0.1.6 test
networkx ==2.8.8 test
numpy ==1.23.5 test
opencv-python ==4.6.0.66 test
outcome ==1.2.0 test
packaging ==22.0 test
parso ==0.8.3 test
partd ==1.3.0 test
pexpect ==4.8.0 test
pickleshare ==0.7.5 test
pillow ==9.3.0 test
pims ==0.6.1 test
pluggy ==1.0.0 test
prompt-toolkit ==3.0.36 test
psutil ==5.9.4 test
ptyprocess ==0.7.0 test
pure-eval ==0.2.2 test
pycodestyle ==2.10.0 test
pyfftw ==0.13.0 test
pygments ==2.13.0 test
pyparsing ==3.0.9 test
pyqt5 ==5.14.2 test
pyqt5-sip ==12.11.0 test
pytest ==7.2.0 test
pytest-cov ==4.0.0 test
pytest-qt ==4.2.0 test
python-dateutil ==2.8.2 test
pywavelets ==1.4.1 test
pyyaml ==6.0 test
qtpy ==2.3.0 test
scikit-image ==0.19.3 test
scipy ==1.9.3 test
six ==1.16.0 test
slicerator ==1.1.0 test
sniffio ==1.3.0 test
sortedcontainers ==2.4.0 test
stack-data ==0.6.2 test
tifffile ==2022.10.10 test
tomli ==2.0.1 test
toolz ==0.12.0 test
traitlets ==5.7.0 test
transonic ==0.5.1 test
trio ==0.22.0 test
wcwidth ==0.2.5 test

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