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Recent Releases of pymare

pymare - 0.0.8

What's Changed

  • [FIX] concordant z values by @jdkent in https://github.com/neurostuff/PyMARE/pull/125

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.7...0.0.8

- Python
Published by jdkent over 1 year ago

pymare - 0.0.7

What's Changed

Other Changes

  • [FIX] p-values going to zero, replace with epsilon by @jdkent in https://github.com/neurostuff/PyMARE/pull/124

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.6...0.0.7

- Python
Published by jdkent over 1 year ago

pymare - 0.0.7rc1

What's Changed

Other Changes

  • [FIX] p-values going to zero, replace with epsilon by @jdkent in https://github.com/neurostuff/PyMARE/pull/124

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.6...0.0.7rc1

- Python
Published by jdkent over 1 year ago

pymare - 0.0.6

What's Changed

🎉 Exciting New Features

  • Support precomputed correlation matrix for calculating variance inflation term in Stouffers by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/121 ### Other Changes
  • [FIX] update codecov by @jdkent in https://github.com/neurostuff/PyMARE/pull/123

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4...0.0.6

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.6rc1

What's Changed

🎉 Exciting New Features

  • Support precomputed correlation matrix for calculating variance inflation term in Stouffers by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/121 ### Other Changes
  • [FIX] update codecov by @jdkent in https://github.com/neurostuff/PyMARE/pull/123

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4...0.0.6rc1

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.5rc1

What's Changed

🎉 Exciting New Features

  • Support precomputed correlation matrix for calculating variance inflation term in Stouffers by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/121

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4...0.0.5

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.4

What's Changed

🛠 Breaking Changes

  • Add an inflation factor to correct for multiple contrasts in Stouffer's combination test by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/117 ### 🎉 Exciting New Features
  • Add FDR and Bonferroni correction functions by @tsalo in https://github.com/neurostuff/PyMARE/pull/87
  • Make n and X optional for DataFrame-based Datasets by @tsalo in https://github.com/neurostuff/PyMARE/pull/89
  • Add a datasets module for example meta-analytic datasets by @tsalo in https://github.com/neurostuff/PyMARE/pull/90
  • Drop support for Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/118
  • Support Python 3.11 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/119 ### 🐛 Bug Fixes
  • Coerce tau2 to an array in permutation_test by @tsalo in https://github.com/neurostuff/PyMARE/pull/94
  • Fix maximum likelihood Estimators' SE outputs by @tsalo in https://github.com/neurostuff/PyMARE/pull/98
  • Allow Results objects to work with Estimators' fit() method by @tsalo in https://github.com/neurostuff/PyMARE/pull/104
  • Add shape check to Dataset initialization by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/106
  • Use 1D array in scipy.optimize.minimize by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/111
  • Fix StanMetaRegression estimator by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/108 ### Other Changes
  • Use BibTeX for references and improve docstrings by @tsalo in https://github.com/neurostuff/PyMARE/pull/86
  • Add a code of conduct and update documentation theme by @tsalo in https://github.com/neurostuff/PyMARE/pull/96
  • Enhance Dataset example by @tsalo in https://github.com/neurostuff/PyMARE/pull/100
  • Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/114
  • Support Python 3.10 by @tsalo in https://github.com/neurostuff/PyMARE/pull/82
  • rename deprecated variable by @jdkent in https://github.com/neurostuff/PyMARE/pull/120

New Contributors

  • @JulioAPeraza made their first contribution in https://github.com/neurostuff/PyMARE/pull/106
  • @jdkent made their first contribution in https://github.com/neurostuff/PyMARE/pull/120

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.3...0.0.4

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.4rc6

What's Changed

🛠 Breaking Changes

  • Add an inflation factor to correct for multiple contrasts in Stouffer's combination test by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/117 ### 🎉 Exciting New Features
  • Drop support for Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/118
  • Support Python 3.11 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/119 ### 🐛 Bug Fixes
  • Use 1D array in scipy.optimize.minimize by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/111
  • Fix StanMetaRegression estimator by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/108 ### Other Changes
  • Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/114
  • Support Python 3.10 by @tsalo in https://github.com/neurostuff/PyMARE/pull/82
  • rename deprecated variable by @jdkent in https://github.com/neurostuff/PyMARE/pull/120

New Contributors

  • @jdkent made their first contribution in https://github.com/neurostuff/PyMARE/pull/120

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc2...0.0.4rc6

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.4rc5

What's Changed

🛠 Breaking Changes

  • Add an inflation factor to correct for multiple contrasts in Stouffer's combination test by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/117 ### 🎉 Exciting New Features
  • Drop support for Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/118
  • Support Python 3.11 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/119 ### 🐛 Bug Fixes
  • Use 1D array in scipy.optimize.minimize by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/111
  • Fix StanMetaRegression estimator by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/108 ### Other Changes
  • Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/114
  • Support Python 3.10 by @tsalo in https://github.com/neurostuff/PyMARE/pull/82
  • rename deprecated variable by @jdkent in https://github.com/neurostuff/PyMARE/pull/120

New Contributors

  • @jdkent made their first contribution in https://github.com/neurostuff/PyMARE/pull/120

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc2...0.0.4rc5

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.4rc4

What's Changed

🛠 Breaking Changes

  • Add an inflation factor to correct for multiple contrasts in Stouffer's combination test by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/117 ### 🎉 Exciting New Features
  • Drop support for Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/118
  • Support Python 3.11 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/119 ### 🐛 Bug Fixes
  • Use 1D array in scipy.optimize.minimize by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/111
  • Fix StanMetaRegression estimator by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/108 ### Other Changes
  • Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/114
  • Support Python 3.10 by @tsalo in https://github.com/neurostuff/PyMARE/pull/82

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc2...0.0.4rc3

What's Changed

🛠 Breaking Changes

  • Add an inflation factor to correct for multiple contrasts in Stouffer's combination test by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/117 ### 🎉 Exciting New Features
  • Drop support for Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/118
  • Support Python 3.11 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/119 ### 🐛 Bug Fixes
  • Use 1D array in scipy.optimize.minimize by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/111
  • Fix StanMetaRegression estimator by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/108 ### Other Changes
  • Raise deprecation warnings with Python 3.6 and 3.7 by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/114
  • Support Python 3.10 by @tsalo in https://github.com/neurostuff/PyMARE/pull/82

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc2...0.0.4rc3

What's Changed

Other Changes

  • rename deprecated variable by @jdkent in https://github.com/neurostuff/PyMARE/pull/120

New Contributors

  • @jdkent made their first contribution in https://github.com/neurostuff/PyMARE/pull/120

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc3...0.0.4rc4

- Python
Published by jdkent almost 2 years ago

pymare - 0.0.4rc2

A prerelease for a NiMARE PR.

What's Changed

🎉 Exciting New Features

  • Make n and X optional for DataFrame-based Datasets by @tsalo in https://github.com/neurostuff/PyMARE/pull/89
  • Add a datasets module for example meta-analytic datasets by @tsalo in https://github.com/neurostuff/PyMARE/pull/90 ### 🐛 Bug Fixes
  • Coerce tau2 to an array in permutation_test by @tsalo in https://github.com/neurostuff/PyMARE/pull/94
  • Fix maximum likelihood Estimators' SE outputs by @tsalo in https://github.com/neurostuff/PyMARE/pull/98
  • Allow Results objects to work with Estimators' fit() method by @tsalo in https://github.com/neurostuff/PyMARE/pull/104
  • Add shape check to Dataset initialization by @JulioAPeraza in https://github.com/neurostuff/PyMARE/pull/106 ### Other Changes
  • Add a code of conduct and update documentation theme by @tsalo in https://github.com/neurostuff/PyMARE/pull/96
  • Enhance Dataset example by @tsalo in https://github.com/neurostuff/PyMARE/pull/100

New Contributors

  • @JulioAPeraza made their first contribution in https://github.com/neurostuff/PyMARE/pull/106

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.4rc1...0.0.4rc2

- Python
Published by tsalo over 3 years ago

pymare - 0.0.4rc1

What's Changed

🎉 Exciting New Features

  • Add FDR and Bonferroni correction functions by @tsalo in https://github.com/neurostuff/PyMARE/pull/87 ### Other Changes
  • Use BibTeX for references and improve docstrings by @tsalo in https://github.com/neurostuff/PyMARE/pull/86

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.3...0.0.4rc1

- Python
Published by tsalo almost 4 years ago

pymare - 0.0.3

This release removes 3.5 support and temporarily drops StanMetaRegression support for Python 3.7+ (just until we can figure out how to use PyStan3).

What's Changed

🛠 Breaking Changes

  • Remove 3.5 support, add tests on other Python versions, and break StanMetaRegression for Python 3.7+ by @tsalo in https://github.com/neurostuff/PyMARE/pull/66 ### 🐛 Bug Fixes
  • Remove use of deprecated sympy.core.compatibility module by @tsalo in https://github.com/neurostuff/PyMARE/pull/81 ### Other Changes
  • Simplify packaging and update versioneer by @tsalo in https://github.com/neurostuff/PyMARE/pull/69
  • Run unit tests automatically every Sunday by @tsalo in https://github.com/neurostuff/PyMARE/pull/77
  • Improve auto-documentation templates. by @tsalo in https://github.com/neurostuff/PyMARE/pull/78
  • Run updated version of black to fix CI by @tsalo in https://github.com/neurostuff/PyMARE/pull/79

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.2...0.0.3

- Python
Published by tsalo almost 4 years ago

pymare - 0.0.3rc2

Fixes problem with sympy version 1.10. <!-- Release notes generated using configuration in .github/release.yml at master -->

What's Changed

🛠 Breaking Changes

  • Remove 3.5 support, add tests on other Python versions, and break StanMetaRegression for Python 3.7+ by @tsalo in https://github.com/neurostuff/PyMARE/pull/66 ### 🐛 Bug Fixes
  • Remove use of deprecated sympy.core.compatibility module by @tsalo in https://github.com/neurostuff/PyMARE/pull/81 ### Other Changes
  • Simplify packaging and update versioneer by @tsalo in https://github.com/neurostuff/PyMARE/pull/69
  • Run unit tests automatically every Sunday by @tsalo in https://github.com/neurostuff/PyMARE/pull/77
  • Improve auto-documentation templates. by @tsalo in https://github.com/neurostuff/PyMARE/pull/78
  • Run updated version of black to fix CI by @tsalo in https://github.com/neurostuff/PyMARE/pull/79

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.2...0.0.3rc2

- Python
Published by tsalo almost 4 years ago

pymare - 0.0.3rc1

What's Changed

🛠 Breaking Changes

  • Remove 3.5 support, add tests on other Python versions, and break StanMetaRegression for Python 3.7+ by @tsalo in https://github.com/neurostuff/PyMARE/pull/66 ### Other Changes
  • Simplify packaging and update versioneer by @tsalo in https://github.com/neurostuff/PyMARE/pull/69

Full Changelog: https://github.com/neurostuff/PyMARE/compare/0.0.2...0.0.3rc1

- Python
Published by tsalo about 4 years ago

pymare - 0.0.2

This is mostly a bugfix release.

Changes: * Adds license information * Adds tests * Improves CI testing * Improves precision in p-value computation

- Python
Published by tyarkoni over 5 years ago

pymare - 0.0.1

This is the initial release of PyMARE. This is alpha software under active development, and the API may change in unexpected ways.

- Python
Published by tyarkoni almost 6 years ago