Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.2%) to scientific vocabulary
Repository
Use pybids with datasets in the cloud
Basic Info
- Host: GitHub
- Owner: nrdg
- License: mit
- Language: Python
- Default Branch: main
- Homepage: https://nrdg.github.io/cloud_bids_layout
- Size: 312 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 4
- Releases: 2
Metadata Files
README.md
Cloud-BIDS-Layout
Cloud-BIDS-Layout is a lightweight wrapper for pybids' BIDS.Layout that can grab BIDS studies from Amazon S3.
Motivation
The Brain Imaging Data Structure (BIDS)
is an intuitive, accessible, and community-driven data specification for
neuroimaging data. Pybids is
an exceptionally written Python library that makes it easy for
researchers to query, summarize, and manipulate BIDS-compliant data.
However, it's workhorse BIDSLayout class doesn't index remote datasets
stored in the cloud. That's where Cloud-BIDS-Layout comes in.
Cloud-BIDS-Layout allows its user to specify a remote location for
a BIDS-Compliant dataset. Currently only Amazon S3 locations are
supported but support for Google Cloud Storage and others is coming
soon. Cloud-BIDS-Layout creates a lightweight semblance of the remote
dataset, just enough to pass to pybids' BIDSLayout for indexing.
The user can then use pybids' familiar .get() method to select a
subset of the study that they wish to download to the host. See the
documentation for more details.
This is the Cloud-BIDS-Layout development site. You can view the source code, file new issues, and contribute to Cloud-BIDS-Layouts's development. If you are just getting started, you should look at the Cloud-BIDS-Layout documentation
Contributing
We love contributions! Cloud-BIDS-Layout is open source, built on open source, and we'd love to have you hang out in our community.
We have developed some guidelines for contributing to Cloud-BIDS-Layout.
Imposter syndrome disclaimer: We want your help. No, really.
There may be a little voice inside your head that is telling you that you're not ready to be an open source contributor; that your skills aren't nearly good enough to contribute. What could you possibly offer a project like this one?
We assure you - the little voice in your head is wrong. If you can write code at all, you can contribute code to open source. Contributing to open source projects is a fantastic way to advance one's coding skills. Writing perfect code isn't the measure of a good developer (that would disqualify all of us!); it's trying to create something, making mistakes, and learning from those mistakes. That's how we all improve, and we are happy to help others learn.
Being an open source contributor doesn't just mean writing code, either. You can help out by writing documentation, tests, or even giving feedback about the project (and yes - that includes giving feedback about the contribution process). Some of these contributions may be the most valuable to the project as a whole, because you're coming to the project with fresh eyes, so you can see the errors and assumptions that seasoned contributors have glossed over.
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
The imposter syndrome disclaimer was originally written by Adrienne Lowe for a PyCon talk, and was adapted based on its use in the README file for the MetPy project.
Owner
- Name: NRDG
- Login: nrdg
- Kind: organization
- Location: The University of Washington, Seattle
- Website: http://neuroinformatics.uw.edu/
- Repositories: 13
- Profile: https://github.com/nrdg
Neuroinformatics Research and Development Group
GitHub Events
Total
Last Year
Committers
Last synced: over 3 years ago
All Time
- Total Commits: 35
- Total Committers: 2
- Avg Commits per committer: 17.5
- Development Distribution Score (DDS): 0.114
Top Committers
| Name | Commits | |
|---|---|---|
| Adam Richie-Halford | r****d@u****u | 31 |
| Adam Richie-Halford | r****d@g****m | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 5
- Total pull requests: 1
- Average time to close issues: about 14 hours
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.2
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- richford (5)
Pull Request Authors
- dependabot[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 14 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 2
pypi.org: cloud-bids-layout
Cloud-BIDS-Layout: Use pybids with Amazon S3
- Homepage: https://github.com/nrdg/cloud_bids_layout
- Documentation: https://cloud-bids-layout.readthedocs.io/
- License: MIT
-
Latest release: 0.1.2
published almost 6 years ago
Rankings
Dependencies
- Click ==7.0 development
- Sphinx ==1.8.5 development
- bump2version ==0.5.11 development
- coverage ==4.5.4 development
- docutils ==0.15.2 development
- flake8 ==3.7.8 development
- moto >=1.3.15.dev964 development
- nbsphinx ==0.7.1 development
- numpydoc ==1.1.0 development
- pip ==20.1.1 development
- pre-commit * development
- pytest ==5.4.3 development
- pytest-cov ==2.8.1 development
- pytest-runner ==5.1 development
- tox ==3.17.0 development
- watchdog ==0.9.0 development
- wheel ==0.33.6 development
- Click >=7.0
- boto3 ==1.14.28
- botocore ==1.17.28
- pybids ==0.11.1
- s3fs ==0.4.2