Recent Releases of phys2cvr
phys2cvr - 0.19.0
🚀 Enhancement
- Update installation to add python 3.12 compatibility and update a few settings #120 (@pre-commit-ci[bot] @smoia)
🏠 Internal
- Updated versioneer to v0.29 #123 (@kristinazvolanek @pre-commit-ci[bot])
Authors: 3
- @pre-commit-ci[bot]
- Kristina Zvolanek (@kristinazvolanek)
- Stefano Moia (@smoia)
- Python
Published by smoia 10 months ago
phys2cvr - 0.18.6
🐛 Bug Fix
- [pre-commit.ci] pre-commit autoupdate #119 (@pre-commit-ci[bot] @smoia)
Authors: 2
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Python
Published by smoia over 1 year ago
phys2cvr - 0.18.4
🐛 Bug Fix
🏠 Internal
- [pre-commit.ci] pre-commit autoupdate #114 (@pre-commit-ci[bot])
Authors: 3
- @pre-commit-ci[bot]
- Snyk bot (@snyk-bot)
- Stefano Moia (@smoia)
- Python
Published by smoia almost 2 years ago
phys2cvr - 0.18.1
🐛 Bug Fix
- Fix bandpass Butterworth filter order to get a better filter, add option to change order in CLI #90 (@smoia)
- [pre-commit.ci] pre-commit autoupdate #88 (@pre-commit-ci[bot] @smoia)
⚠️ Pushed to master
- int: codespell happy (@smoia)
- Start adding a bunch of tests (@smoia)
- Wrong library ;) (@smoia)
- int: Add codespell (@smoia)
- int: update auto-release environment (@smoia)
- int: update python-publish environment (@smoia)
🏠 Internal
- [pre-commit.ci] pre-commit autoupdate #87 (@pre-commit-ci[bot])
Authors: 2
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Python
Published by smoia over 2 years ago
phys2cvr - 0.18.0
💥 Breaking Change during development
- Add option to add orthogonalised regressors in phys2cvr #84 (@smoia @pre-commit-ci[bot])
🐛 Bug Fix
⚠️ Pushed to master
- int: Fix issue templates (@smoia)
Authors: 2
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Python
Published by smoia almost 3 years ago
phys2cvr - 0.17.2
🐛 Bug Fix
- [pre-commit.ci] pre-commit autoupdate #64 (@pre-commit-ci[bot])
⚠️ Pushed to master
- docs: Update developer installation (@smoia)
🏠 Internal
- [pre-commit.ci] pre-commit autoupdate #63 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #62 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #61 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #59 (@pre-commit-ci[bot])
Authors: 2
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Python
Published by smoia about 3 years ago
phys2cvr - 0.17.1
🐛 Bug Fix
- [pre-commit.ci] pre-commit autoupdate #58 (@pre-commit-ci[bot])
Authors: 1
- Python
Published by smoia about 3 years ago
phys2cvr - 0.17.0
🚀 Enhancement
- Add colormaps to plot lag maps (and sneak in contributors updates) #56 (@smoia @pre-commit-ci[bot])
Authors: 2
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Python
Published by smoia over 3 years ago
phys2cvr - 0.12.1
🐛 Bug Fix
- Let signal be resampled over any axis of the input timeseries (default to first dimension) #47 (@smoia)
⚠️ Pushed to master
- docs: fix readme citations (@smoia)
- docs: update README with installation instruction and badges (@smoia)
Authors: 1
- Stefano Moia (@smoia)
- Python
Published by smoia almost 4 years ago
phys2cvr - 0.11.1
🐛 Bug Fix
- Fix if statement for skipping convolution #43 (@kristinazvolanek)
Authors: 1
- Kristina Zvolanek (@kristinazvolanek)
- Python
Published by smoia almost 4 years ago
phys2cvr - 0.6.1
:tada: This release contains work from a new contributor! :tada:
Thank you, DeepSource Bot (@deepsourcebot), for all your work!
⚠️ Pushed to master
- Add .deepsource.toml (@deepsourcebot)
Authors: 1
- DeepSource Bot (@deepsourcebot)
- Python
Published by smoia about 4 years ago
phys2cvr - 0.6.0
💥 Breaking Change during development
- Updated regression function #32 (@kristinazvolanek @smoia)
Authors: 2
- Kristina Zvolanek (@kristinazvolanek)
- Stefano Moia (@smoia)
- Python
Published by smoia about 4 years ago
phys2cvr - 0.4.1
🐛 Bug Fix
- Fix peak array loading for index purposes #28 (@kristinazvolanek)
Authors: 1
- Kristina Zvolanek (@kristinazvolanek)
- Python
Published by smoia over 4 years ago
phys2cvr - 0.2.4
:tada: This release contains work from a new contributor! :tada:
Thank you, Kristina Zvolanek (@kristinazvolanek), for all your work!
🐛 Bug Fix
- Fixed output regressor to be the optimally shifted version, rather than the original demeaned regressor #25 (@kristinazvolanek)
Authors: 1
- Kristina Zvolanek (@kristinazvolanek)
- Python
Published by smoia over 4 years ago
phys2cvr - 0.0.1
🐛 Bug Fix
⚠️ Pushed to master
- Add workflows and templates (@smoia)
- Parser options all there. (@smoia)
- lag_step becomes 0.3 (@smoia)
- Rename lag variables (@smoia)
- Rename maxlag for coherence (@smoia)
- Force runregression to be true if laggedregression is! (@smoia)
- Remove unused parameter (@smoia)
- Start working that parser (@smoia)
- Fix relative lag background (@smoia)
- Minor text correction and transform comments into issues (@smoia)
- Signal percentage change the data outside of regression (@smoia)
- When co2 signal is not provided, force skip convolution (@smoia)
- Add relative lag export (@smoia)
- Reduce butter order to 1 (@smoia)
- Improve empty array creation, change lag variable names, change take command due to heavy memory load (@smoia)
- Fix f string (@smoia)
- Remove breakpoints (@smoia)
- Fix beta and tstat assignment (@smoia)
- Invert regr shift call and fix assignment of volumes after regression (@smoia)
- Close those plot (@smoia)
- Skip hrf plot (@smoia)
- Better try than have the doubt (@smoia)
- Fine shifts exist only if they exist (@smoia)
- Fix lagged regressor matrices shape (@smoia)
- Fix step (@smoia)
- Move output to right folder (@smoia)
- stats should be debugged. (@smoia)
- Correct regressors hstack (@smoia)
- Also say the right matrix! (@smoia)
- read denoising matrix, not its name (@smoia)
- Invert petco2hrf shifts matrix orientation (@smoia)
- Remember to add a plot of the xcorr with both xcorrs if two were used (@smoia)
- Shorter tp assignment (@smoia)
- join comes from paths... (@smoia)
- Fix func import (@smoia)
- Fix mask import and average of functional signal (@smoia)
- Boolean input variables as booleans rather than empty (@smoia)
- Fix general pre-installation stuff (@smoia)
- Fix authors (@smoia)
- DEBUG (@smoia)
- Add multiple denoise matrices (@smoia)
- If user specifies lag map, use it! (@smoia)
- stats.regression returns all lagged regressors in memory (@smoia)
- Update comments (@smoia)
- If no outdir is specified, make one in the functional input folder (@smoia)
- Log to log folder (skip code folder) (@smoia)
- Simplify input (@smoia)
- Update inputs accordingly (@smoia)
- Check dimension of confounders input (@smoia)
- Add R square computation (@smoia)
- Add possibility to skip convolution (e.g. if input is already petco2hrf) (@smoia)
- Add legendre and OLS regression (@smoia)
- Move everything related to statistical models to stats module (@smoia)
- Move signal related functions to signal module (@smoia)
- Move io function to their own module (@smoia)
- Remove extra main (@smoia)
- Remove nilearn and fix imports (@smoia)
- Start adding lagged regression - but it's totally untested. (@smoia)
- Update necessary libraries and import OLSModel (@smoia)
- Read phys files from peakdet! (@smoia)
- Remove save call from main workflow (@smoia)
- Less variables, more understanding (@smoia)
- Add support for gzipped tsv (@smoia)
- Load phys files (@smoia)
- Fix check extension (@smoia)
- Continue file import, add TR reading, Add filter application (@smoia)
- Start working on get_regressor (@smoia)
- Add a filter signal function (@smoia)
- Save bash call as a function not in main workflow (@smoia)
- Change scipy import (@smoia)
- Change author (@smoia)
- Add most of file import (@smoia)
- Clear up package (@smoia)
- Update contributors (@smoia)
- Add physiopy logo (@smoia)
- Add parser and main workflow (@smoia)
- Correct development status (@smoia)
- Add infra files (@smoia)
- Initial commit (@smoia)
📝 Documentation
Authors: 1
- Stefano Moia (@smoia)
- Python
Published by smoia over 4 years ago