Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 6 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.7%) to scientific vocabulary
Keywords
bookdown
phd
r
thesis
Last synced: 6 months ago
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JSON representation
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Repository
My PhD thesis
Basic Info
- Host: GitHub
- Owner: christianholland
- License: gpl-3.0
- Language: TeX
- Default Branch: master
- Homepage: https://christianholland-thesis.netlify.app
- Size: 40.5 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Topics
bookdown
phd
r
thesis
Created almost 6 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
Citation
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
# My PhD thesis
[](https://app.netlify.com/sites/christianholland-thesis/deploys)
## From gene expression to pathway and transcription factor activities to study chronic liver diseases
This thesis is based on three manuscripts each forming a separate chapter. An online version of this thesis can be accessed at [Netlify](https://christianholland-thesis.netlify.app).
### Chapter 1
Transfer of regulatory knowledge from human to mouse for functional genomics analysis ([Publication](https://doi.org/10.1016/j.bbagrm.2019.194431), [GitHub repository](https://github.com/saezlab/ConservedFootprints)).
### Chapter 2
Robustness and applicability of transcription factor and pathway analysis tools
on single-cell RNA-seq data ([Publication](https://doi.org/10.1186/s13059-020-1949-z), [GitHub repository](https://github.com/saezlab/FootprintMethods_on_scRNAseq)).
### Chapter 3
Transcriptomic cross-species analysis of chronic liver disease reveals consistent regulation between humans and mice ([Publication](https://doi.org/10.1002/hep4.1797), [GitHub repository](https://github.com/saezlab/liver-disease-atlas)).
Owner
- Name: Christian Holland
- Login: christianholland
- Kind: user
- Location: Ludwigshafen
- Company: BASF
- Website: https://christianholland.herokuapp.com/
- Twitter: mr_netherlands
- Repositories: 4
- Profile: https://github.com/christianholland
Data/Digitalization scientist at BASF Former PhD student @saezlab
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use any of the analysis in this thesis please cite as below."
authors:
- family-names: "Holland"
given-names: "Christian H."
orcid: "https://orcid.org/0000-0002-3060-5786"
title: "From gene expression to pathway and transcription factor activities to study chronic liver diseases"
url: "https://github.com/christianholland/thesis"
preferred-citation:
type: unpublished
authors:
- family-names: "Holland"
given-names: "Christian H."
orcid: "https://orcid.org/0000-0002-3060-5786"
doi: "TBD"
month: TBD
title: "From gene expression to pathway and transcription factor activities to study chronic liver diseases"
year: 2021
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- Average comments per issue: 0
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