pymetadata - 0.5.3

Release notes for pymetadata 0.5.3

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• fixes in namespaces
• updated ontologies

Your pymetadata team

- Python
Published by github-actions[bot] 11 months ago

pymetadata - 0.5.2

Release notes for pymetadata 0.5.2

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• Speedup CI-CD with uv
• Markdown README

Your pymetadata team

- Python
Published by github-actions[bot] about 1 year ago

pymetadata - 0.5.1

Release notes for pymetadata 0.5.1

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• Fix #52 windows paths

Your pymetadata team

- Python
Published by github-actions[bot] about 1 year ago

pymetadata - 0.5.0

Release notes for pymetadata 0.5.0

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• drop support py3.9, support py3.13
• more permissive licensing under MIT license
• switch to uv, ruff, hatchling bump-my-version (Fix #53, Fix #54)

Your pymetadata team

- Python
Published by github-actions[bot] about 1 year ago

pymetadata - 0.4.4

Release notes for pymetadata 0.4.3

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• better handling of resources and cache
• customization of cache path via setting pymetadata.CACHE_PATH

- Python
Published by github-actions[bot] almost 2 years ago

pymetadata - 0.4.2

Release notes for pymetadata 0.4.2

We are pleased to release the next version of pymetadata including the following changes:

Features & fixes

• drop legacy uuid (thanks @cheriimoya #46)
• cache dir only created if cache is activated (thanks @cheriimoya #45)
• fix stato namespace issue #48
• updated dependencies depinfo>=1.7 lxml>=5.2 rich>=13.7 requests>=2.31 zeep>=4.2.1 pronto>=2.5.6 fastobo>=0.12.3 jinja2>=3.1 xmltodict>=0.13.0 pydantic>=2.6
• updated ontologies SBO, ECO
• updated documentation
• fix incorrect identifiers.org prefixes for COMBINE archives (thanks @robertvi #50) Your pymetadata team

- Python
Published by github-actions[bot] almost 2 years ago

pymetadata - 0.4.1

Release notes for pymetadata 0.4.1

We are pleased to release the next version of pymetadata including the following changes:

Features

• updated development dependencies
• updated release actions
• drop python 3.8, support python 3.12

Your pymetadata team

- Python
Published by github-actions[bot] about 2 years ago

pymetadata - 0.4.0

Release notes for pymetadata 0.4.0

We are pleased to release the next version of pymetadata including the following changes:

Features

• updated dependencies: rich>=13.6, requests>=2.31, zeep>=4.2.1, pronto>=2.5.5, pydantic>=2.4
• Fix #44, Switch to OLS4
• update of ontologies in metadata: eco, kisao, sbo

Your pymetadata team

- Python
Published by github-actions[bot] over 2 years ago

pymetadata - 0.3.11

Release notes for pymetadata 0.3.11

We are pleased to release the next version of pymetadata including the following changes:

Features

• fix issue with registry: unexpected keyword argument 'deprecationOfflineDate'

Your pymetadata team

- Python
Published by github-actions[bot] over 2 years ago

pymetadata - 0.3.10

Release notes for pymetadata 0.3.9

We are pleased to release the next version of pymetadata including the following changes:

Features

• bump pydantic dependency to >2.1

Your pymetadata team

- Python
Published by github-actions[bot] over 2 years ago

pymetadata - 0.3.9

Release notes for pymetadata 0.3.9

We are pleased to release the next version of pymetadata including the following changes:

Features

• bugfixes for changing identifiers web service

Your pymetadata team

- Python
Published by github-actions[bot] over 2 years ago

pymetadata - 0.3.8

Release notes for pymetadata 0.3.8

We are pleased to release the next version of pymetadata including the following changes:

Features

• fixing identifiers.org patterns

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.7

Release notes for pymetadata 0.3.7

We are pleased to release the next version of pymetadata including the following changes:

Features

• bump fastobo>=0.12.2 to solve M1 issues (see https://github.com/fastobo/fastobo-py/issues/302)

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.6

Release notes for pymetadata 0.3.6

We are pleased to release the next version of pymetadata including the following changes:

Features

• updated github actions
• python 3.11 support

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.5

Release notes for pymetadata 0.3.5

We are pleased to release the next version of pymetadata including the following changes:

Features

• fixing minor issues for depending packages
• fixing mypy issues

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.4

Release notes for pymetadata 0.3.3

We are pleased to release the next version of pymetadata including the following changes:

Features

• bumping dependencies python install_requires = depinfo>=2.2.0 lxml>=4.9.1 rich>=12.5.1 requests>=2.28.1 zeep>=4.1.0 uuid>=1.30 pronto>=2.5.0 jinja2>=3.1.2 xmltodict>=0.13.0 pydantic>=1.10.2 tests_require = tox>=3.25.1 pytest>=7.1.3 pytest-cov>=3.0.0 setup_requires = pytest-runner>=6.0.0

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.3

Release notes for pymetadata 0.3.3

We are pleased to release the next version of pymetadata including the following changes:

Features

• relaxed annotation checking to handle incorrect annotations in models

Your pymetadata team

- Python
Published by github-actions[bot] over 3 years ago

pymetadata - 0.3.2

Release notes for pymetadata 0.3.2

We are pleased to release the next version of pymetadata including the following changes:

Features

• added snomed custom namespace for SNOMED CT support in annotations
• removed sio from custom namespaces, now supported via identifiers.org

Your pymetadata team

- Python
Published by github-actions[bot] almost 4 years ago

pymetadata - 0.3.1

Release notes for pymetadata 0.3.1

We are pleased to release the next version of pymetadata including the following changes:

Features

• minor fixes and integration for pkdb_data
• added DRON namespace

Your pymetadata team

- Python
Published by github-actions[bot] almost 4 years ago

pymetadata - 0.3.0

Release notes for pymetadata 0.3.0

We are pleased to release the next version of pymetadata including the following changes:

Features

• Fix #32, support YAML format
• Fix #33, more robust handling of relative locations
• Fix #34, updated dependency information
• Fix #35, Fix #36, updated unichem webservices and improved code base

Your pymetadata team

- Python
Published by github-actions[bot] almost 4 years ago

pymetadata - 0.2.10

Release notes for pymetadata 0.2.10

We are pleased to release the next version of pymetadata including the following changes:

Features

• Fix #31, twitter integration

Your pymetadata team

- Python
Published by github-actions[bot] almost 4 years ago

pymetadata - 0.2.9

Release notes for pymetadata 0.2.9

We are pleased to release the next version of pymetadata including the following changes:

Features

• Fix #27, refactored test folder
• Fix #28, ontology update
  • Update KISAO to 2.31
  • Update SBO to 28:08:2021 03:13
  • Update ECO to 14:09:2021 16:54
• Fix #25, handle combine archives with encoding errors gracefully

Fixes

Backwards compatibility

Your pymetadata team

- Python
Published by github-actions[bot] almost 4 years ago

pymetadata - 0.2.7

Release notes for pymetadata 0.2.7

We are pleased to release the next version of pymetadata including the following changes:

Features

Fixes

• Fix #22, write out master flag ## Backwards compatibility
• drop python 3.7 support due to end of life

Your pymetadata team

- Python
Published by github-actions[bot] about 4 years ago

pymetadata - 0.2.6

Release notes for pymetadata 0.2.6

We are pleased to release the next version of pymetadata including the following changes:

Features

• bugfix SBML detection in omex

Fixes

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.2.5

Release notes for pymetadata 0.2.5

We are pleased to release the next version of pymetadata including the following changes:

Features

• added format types for FROG

Fixes

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.2.4

Release notes for pymetadata 0.2.4

We are pleased to release the next version of pymetadata including the following changes:

Features

Fixes

• bugfix identifiers codes
• support for decryption
• Fix #20, using DEFLATE for interoperability

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.2.3

Release notes for pymetadata 0.2.3

We are pleased to release the next version of pymetadata including the following changes:

Features

Fixes

• bugfixes and cleanup omex

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.2.1

Release notes for pymetadata 0.2.1

We are pleased to release the next version of pymetadata including the following changes:

Features

• removed libcombine dependency
• Fix #18, python 3.10 support
• improved omex formats and format handling

Fixes

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.2.0

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.1.0

Release notes for pymetadata 0.1.0

We are pleased to release the next version of pymetadata including the following changes:

Features

• guess formats for omex files
• Fix #17, compression support for zips

Fixes

• fixing omex exports

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.22

Release notes for pymetadata 0.0.21

We are pleased to release the next version of pymetadata including the following changes:

Features

Fixes

• relaxing jinja2 dependency for downstream packages

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.21

Release notes for pymetadata 0.0.21

We are pleased to release the next version of pymetadata including the following changes:

Features

• Update KISAO to version 2.30, including SED-ML L1V4 aggregation functions

Fixes

• bugfix ontology template

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.20

Release notes for pymetadata 0.0.20

We are pleased to release the next version of pymetadata including the following changes:

Features

Fixes

• Dropping pyomexmeta to support older mac versions

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.19

Release notes for pymetadata 0.0.19

We are pleased to release the next version of pymetadata including the following changes:

Features

• Helper functions for COMBINE archives

Fixes

• Bugfixes for COMBINE archives

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.18

Release notes for pymetadata 0.0.18

We are pleased to release the next version of pymetadata including the following changes:

Features

• Support for COMBINE archives

Fixes

• Fix #15, COMBINE archive support

Your pymetadata team

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.17

Release notes for pymetadata 0.0.17

• SBO and KISAO helper functions

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.15

Release notes for pymetadata 0.0.15

• Fixing registry resources

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.16

Release notes for pymetadata 0.0.15

• Fixing registry resources

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.14

Release notes for pymetadata 0.0.14

• Fix #9, enable check on all branches & macos tests
• Simplified dependencies
• Fix #13, zenodo metadata added
• Fix #14, updated KISAO
• Fix #7, rich logging
• Fix #12, removed libchebi dependency

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.13

Release notes for pymetadata 0.0.13

• fixing slowdown due to large enums

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.12

Release notes for pymetadata 0.0.12

• minor bugfixes

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.11

Release notes for pymetadata 0.0.10

• typehints added

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.10

Release notes for pymetadata 0.0.10

• ontology enums (Fix #8)
• removed ontology downloads
• fixed mypy issues (Fix #1)
• checks on additional branches (Fix #9)

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.8

Release notes for pymetadata 0.0.7

• bugfix release

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.7

Release notes for pymetadata 0.0.7

New features

• minor changes and fixes

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.6

Release notes for pymetadata 0.0.6

New features

• removed pyomexmeta dependency due to OSX issues

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.5

Release notes for pymetadata 0.0.5

New features

• annotation class and OLS resolution

- Python
Published by github-actions[bot] over 4 years ago

pymetadata - 0.0.4

Release notes for pymetadata 0.0.4

New features

• first package release

- Python
Published by github-actions[bot] over 4 years ago