tomsup
tomsup 👍 Theory of Mind Simulation using Python. A package that allows for easy agent-based modelling of recursive Theory of Mind
Science Score: 67.0%
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✓DOI references
Found 2 DOI reference(s) in README -
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Links to: springer.com, plos.org -
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○Scientific vocabulary similarity
Low similarity (15.7%) to scientific vocabulary
Keywords
Repository
tomsup 👍 Theory of Mind Simulation using Python. A package that allows for easy agent-based modelling of recursive Theory of Mind
Basic Info
- Host: GitHub
- Owner: KennethEnevoldsen
- License: apache-2.0
- Language: Jupyter Notebook
- Default Branch: master
- Homepage: https://kennethenevoldsen.github.io/tomsup/
- Size: 23.8 MB
Statistics
- Stars: 68
- Watchers: 3
- Forks: 8
- Open Issues: 0
- Releases: 2
Topics
Metadata Files
README.md
tomsup: Theory of Mind Simulation using Python
A Python Package for Agent-Based simulations. The package provides a computational eco-system for investigating and comparing computational models of hypothesized Theory of mind (ToM) mechanisms and for using them as experimental stimuli. The package notably includes an easy-to-use implementation of the variational Bayesian k-ToM model developed by Devaine, et al. (2017). This model has been shown able to capture individual and group-level differences in social skills, including between clinical populations and across primate species. It has also been deemed among the best computational models of ToM in terms of interaction with others and recursive representation of mental states. We provide a series of tutorials on how to implement the k-ToM model and a score of simpler types of ToM mechanisms in game-theory based simulations and experimental stimuli, including how to specify custom ToM models, and show examples of how resulting data can be analyzed.
📰 News
- 7 March 2022
- Paper accepted at Behavior Research Methods 2022
- v. 1.1.5
- New plotting features were added
- Speed and memory improvements as well as support for multicore simulations 🏎
- Added workflows to ensure dependencies are being updated
- Minor bugfixes
- v. 1.1.0
- A speed comparison between the matlab implementation was introduced, showing the the tomsup implementation to be notably faster.
- An extensive testsuite was introduced, for how to run it see the FAQ.
- Code coverage was upped to 86% and code quality was raised to A.
- A documentation site was introduced.
- Added continiuous integration to ensure that the package always works as intended, with support for mac, windows and linux tests.
- A new logo was introduced 🌟
- v. 1.0.0
🔧 Setup and installation
tomsup supports Python 3.6 or later. We strongly recommend that you install tomsup from pip. If you haven't installed pip you can install it from the official pip website, otherwise, run:
bash
pip install tomsup
Detailed instructions
You can also install it directly from GitHub by simply running: ```bash pip install git+https://github.com/KennethEnevoldsen/tomsup.git ``` or more explicitly: ```bash git clone https://github.com/KennethEnevoldsen/tomsup.git cd tomsup pip3 install -e . ```Getting Started with tomsup
To get started with tomsup we recommend the tutorials in the tutorials folder. We recommend that you start with the introduction.
The tutorials are provided as Jupyter Notebooks. If you do not have Jupyter Notebook installed, instructions for installing and running can be found here.
| Tutorial | Content | file name | Open with |
| -------------------------------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------- | ------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| Documentation | The documentations of tomsup | | |
| Introduction | a general introduction to the features of tomsup which follows the implementation in the paper | paperimplementation.ipynb | [](https://colab.research.google.com/github/KennethEnevoldsen/tomsup/blob/master/tutorials/paperimplementation.ipynb) |
| Creating an agent | an example of how you would create new agent for the package. | Creatinganagent.ipynb |
|
| Specifying internal states | a short guide on how to specify internal states on a k-ToM agent | specifyinginternalstates.ipynb |
|
| Psychopy experiment | An example of how one might implement tomsup in an experiment | Not a notebook, but a folder, psychopyexperiment | [
](https://github.com/KennethEnevoldsen/tomsup/tree/master/tutorials/psychopyexperiment) |
🤔 Issues and Usage Q&A
To ask report issues or request features, please use the GitHub Issue Tracker. Otherwise, please use the discussion Forums.
FAQ
How do I test the code and run the test suite?
tomsup comes with an extensive test suite. In order to run the tests, you'll usually want to clone the repository and build tomsup from the source. This will also install the required development dependencies and test utilities defined in the requirements.txt. ``` pip install -r requirements.txt pip install pytest python -m pytest ``` which will run all the test in the `tomsup/tests` folder. Specific tests can be run using: ``` python -m pytest tomsup/tests/Does tomsup run on X?
tomssup is intended to run on all major OS, this includes Windows (latest version), MacOS (Catalina) and the latest version of Linux (Ubuntu). Please note these are only the systems tomsup is being actively tested on, if you run on a similar system (e.g. an earlier version of Linux) the package will likely run there as well.How is the documentation generated?
Tomsup uses [sphinx](https://www.sphinx-doc.org/en/master/index.html) to generate documentation. It uses the [Furo](https://github.com/pradyunsg/furo) theme with a custom styling. To make the documentation you can run: ``` # install sphinx, themes and extensions pip install sphinx furo sphinx-copybutton sphinxext-opengraph # generate html from documentations make -C docs html ```Using this Work
License
tomsup is released under the Apache License, Version 2.0.
Citing
If you use this work please cite:
bibtex
@article{waade2022introducing,
title={Introducing tomsup: Theory of mind simulations using Python},
author={Waade, Peter T and Enevoldsen, Kenneth C and Vermillet, Arnault-Quentin and Simonsen, Arndis and Fusaroli, Riccardo},
journal={Behavior Research Methods},
pages={1--35},
year={2022},
publisher={Springer}
}
Owner
- Name: Kenneth Enevoldsen
- Login: KennethEnevoldsen
- Kind: user
- Location: Aarhus
- Company: Center for Humanities Computing Aarhus
- Website: kennethEnevoldsen.com
- Twitter: KCEnevoldsen
- Repositories: 9
- Profile: https://github.com/KennethEnevoldsen
Interdisciplinary PhD Student on representation learning in Clinical NLP and Genetics at Aarhus University and Interacting Minds Centre
Citation (citation.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Waade"
given-names: "Peter"
orcid: "https://orcid.org/0000-0002-6061-0084"
- family-names: "Enevoldsen"
given-names: "Kenneth"
orcid: "https://orcid.org/0000-0001-8733-0966"
- family-names: "Vermillet"
given-names: "Arnault-Quentin"
- family-names: "Simonsen"
given-names: "Arndis"
- family-names: "Fusaroli"
given-names: "Riccardo"
title: "tomsup: Theory of Mind Simulation using Python"
version: 1.1.7
date-released: 2021-02-25
url: "https://github.com/KennethEnevoldsen/tomsup"
preferred-citation:
type: article
authors:
- family-names: "Waade"
given-names: "Peter"
orcid: "https://orcid.org/0000-0002-6061-0084"
- family-names: "Enevoldsen"
given-names: "Kenneth"
orcid: "https://orcid.org/0000-0001-8733-0966"
- family-names: "Vermillet"
given-names: "Arnault-Quentin"
- family-names: "Simonsen"
given-names: "Arndis"
- family-names: "Fusaroli"
given-names: "Riccardo"
doi: "https://doi.org/10.3758/s13428-022-01827-2"
journal: "Behavior Research Methods"
month: 3
title: "Introducing tomsup: Theory of mind simulations using Python"
issue: 1
volume: 1
year: 2022
GitHub Events
Total
- Watch event: 4
Last Year
- Watch event: 4
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 7
- Total pull requests: 79
- Average time to close issues: 8 months
- Average time to close pull requests: 4 days
- Total issue authors: 3
- Total pull request authors: 5
- Average comments per issue: 1.43
- Average comments per pull request: 0.52
- Merged pull requests: 53
- Bot issues: 0
- Bot pull requests: 64
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- PTWaade (4)
- KennethEnevoldsen (2)
- fusaroli (1)
Pull Request Authors
- dependabot[bot] (64)
- KennethEnevoldsen (12)
- PTWaade (1)
- langner (1)
- Vogel612 (1)
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Packages
- Total packages: 1
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Total downloads:
- pypi 44 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 14
- Total maintainers: 1
pypi.org: tomsup
An implementation of game theory of mind in a agent based framework following the implementation of Devaine, et al. (2017).
- Documentation: https://tomsup.readthedocs.io/
- License: Apache License 2.0
-
Latest release: 1.3.1
published almost 3 years ago
Rankings
Maintainers (1)
Dependencies
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- scipy >=1.6.3
- seaborn >=0.11.1
- sphinx *
- sphinx-copybutton *
- sphinxext-opengraph *
- wasabi >=0.8.2,<0.11.0
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